HL_9NLS_047

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

9NLS|1|R1|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLS_047 not in the Motif Atlas

Homologous match to HL_9DFE_046

Geometric discrepancy: 0.3652

The information below is about HL_9DFE_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

9NLS|1|R1|G|1910
9NLS|1|R1|U|1911
9NLS|1|R1|A|1912
9NLS|1|R1|A|1913
9NLS|1|R1|C|1914
9NLS|1|R1|U|1915
9NLS|1|R1|A|1916
9NLS|1|R1|U|1917
9NLS|1|R1|A|1918
9NLS|1|R1|A|1919
9NLS|1|R1|C|1920

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain R3

Small subunit ribosomal RNA; SSU rRNA

Chain T

Transfer RNA; tRNA