HL_9NLS_048

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

9NLS|1|R1|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLS_048 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0959

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9NLS|1|R1|G|1949
9NLS|1|R1|G|1950
9NLS|1|R1|U|1951
9NLS|1|R1|A|1952
9NLS|1|R1|A|1953
9NLS|1|R1|G|1954
9NLS|1|R1|U|1955
9NLS|1|R1|U|1956
9NLS|1|R1|C|1957

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L14

Chain R3

Small subunit ribosomal RNA; SSU rRNA