HL_9NLS_052
3D structure
- PDB id
- 9NLS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 9NLS|1|R1|G|2250
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9NLS_052 not in the Motif Atlas
- Homologous match to HL_4WF9_049
- Geometric discrepancy: 0.1801
- The information below is about HL_4WF9_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_85367.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
9NLS|1|R1|C|2248
9NLS|1|R1|U|2249
9NLS|1|R1|G|2250
9NLS|1|R1|G|2251
9NLS|1|R1|G|2252
9NLS|1|R1|G|2253
9NLS|1|R1|C|2254
9NLS|1|R1|G|2255
9NLS|1|R1|G|2256
Current chains
- Chain R1
- 23S ribosomal RNA
Nearby chains
- Chain 16
- 50S ribosomal protein L16
- Chain 27
- Large ribosomal subunit protein bL27
- Chain T
- Transfer RNA; tRNA
- Chain Y
- Probable ATP-binding protein YbiT
Coloring options: