HL_9NLS_055

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLS_055 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.123

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9NLS|1|R1|U|2324
9NLS|1|R1|G|2325
9NLS|1|R1|C|2326
9NLS|1|R1|A|2327
9NLS|1|R1|A|2328
9NLS|1|R1|U|2329
9NLS|1|R1|G|2330
9NLS|1|R1|G|2331

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 27

Large ribosomal subunit protein bL27

Chain 5

50S ribosomal protein L5