HL_9NLS_065

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9NLS|1|R1|G|2751, 9NLS|1|R1|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLS_065 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0958

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9NLS|1|R1|C|2745
9NLS|1|R1|U|2746
9NLS|1|R1|G|2747
9NLS|1|R1|A|2748
9NLS|1|R1|A|2749
9NLS|1|R1|A|2750
9NLS|1|R1|G|2751
9NLS|1|R1|C|2752
9NLS|1|R1|A|2753
9NLS|1|R1|U|2754
9NLS|1|R1|C|2755
9NLS|1|R1|U|2756
9NLS|1|R1|A|2757
9NLS|1|R1|A|2758
9NLS|1|R1|G|2759

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 13

Large ribosomal subunit protein uL13

Chain 36

50S ribosomal protein L36

Chain 6

Large ribosomal subunit protein uL6