HL_9NLS_091
3D structure
- PDB id
- 9NLS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAUGCAACGC
- Length
- 10 nucleotides
- Bulged bases
- 9NLS|1|R3|G|971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9NLS_091 not in the Motif Atlas
- Homologous match to HL_5J7L_021
- Geometric discrepancy: 0.1602
- The information below is about HL_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9NLS|1|R3|G|963
9NLS|1|R3|A|964
9NLS|1|R3|U|965
9NLS|1|R3|G|966
9NLS|1|R3|C|967
9NLS|1|R3|A|968
9NLS|1|R3|A|969
9NLS|1|R3|C|970
9NLS|1|R3|G|971
9NLS|1|R3|C|972
Current chains
- Chain R3
- 16S ribosomal RNA
Nearby chains
- Chain T
- Transfer RNA; tRNA
- Chain si
- Small ribosomal subunit protein uS9
- Chain sj
- 30S ribosomal protein S10
- Chain sm
- 30S ribosomal protein S13
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