HL_9NO7_005

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9NO7|1|A|A|196, 9NO7|1|A|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NO7_005 not in the Motif Atlas

Geometric match to HL_5J7L_139

Geometric discrepancy: 0.0721

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9NO7|1|A|G|194
9NO7|1|A|A|195
9NO7|1|A|A|196
9NO7|1|A|A|197
9NO7|1|A|C|198
9NO7|1|A|A|199
9NO7|1|A|U|200
9NO7|1|A|C|201

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain P

50S ribosomal protein L15