Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9NO7_0011/A/59:68No text annotation
geometric
HL_9DFE_001
HL_17803.1
HL_9NO7_0021/A/87:95No text annotation
geometric
HL_9DFE_002
HL_00911.2
HL_9NO7_0031/A/123:128No text annotation
geometric
HL_9DFE_003
HL_82710.3
HL_9NO7_0041/A/139:142ANo text annotation
geometric
HL_9DFE_004
HL_71391.1
HL_9NO7_0051/A/194:201No text annotation
geometric
HL_5J7L_139
NA
HL_9NO7_0061/A/225:230No text annotation
geometric
HL_9DFE_006
HL_51020.2
HL_9NO7_0071/A/246:252No text annotation
geometric
HL_9DFE_007
HL_76371.2
HL_9NO7_0081/A/271I:271OUNCG variation
geometric
HL_5J7L_200
NA
HL_9NO7_0091/A/305:312T-loop with 1 bulged base
geometric
HL_9DFE_009
HL_13999.3
HL_9NO7_0101/A/319:323No text annotation
geometric
HL_5J7L_143
NA
HL_9NO7_0111/A/327:335T-loop with unstacked turn
geometric
HL_5J7L_144
NA
HL_9NO7_0121/A/383:391No text annotation
HL_9NO7_0131/A/410:417No text annotation
geometric
HL_9DFE_013
HL_30680.5
HL_9NO7_0141/A/462:467GNRA
geometric
HL_4V9F_015
HL_34789.4
HL_9NO7_0151/A/487:493GNRA
geometric
HL_9DFE_015
HL_34789.4
HL_9NO7_0161/A/566:575T-loop with 2 stacked bulged bases
geometric
HL_9DFE_016
HL_33597.3
HL_9NO7_0171/A/612:615No text annotation
geometric
HL_9DFE_017
HL_99456.1
HL_9NO7_0181/A/629:634GNRA
geometric
HL_9DFE_018
HL_34789.4
HL_9NO7_0191/A/641:647GNRA
geometric
HL_9DFE_019
HL_34789.4
HL_9NO7_0201/A/712:719GNRA wlth tandem sheared
geometric
HL_9DFE_020
HL_98423.3
HL_9NO7_0211/A/744:753No text annotation
geometric
HL_9DFE_021
HL_50204.1
HL_9NO7_0221/A/779:785No text annotation
geometric
HL_5J7L_156
NA
HL_9NO7_0231/A/826:831No text annotation
geometric
HL_4WF9_025
HL_27530.1
HL_9NO7_0251/A/955:962GNRA
geometric
HL_9DFE_025
HL_34789.4
HL_9NO7_0261/A/978:985No text annotation
geometric
HL_9DFE_026
HL_47171.1
HL_9NO7_0271/A/1171:1178No text annotation
HL_9NO7_0281/A/1222:1227GNRA
geometric
HL_4YAZ_003
HL_34789.4
HL_9NO7_0291/A/1281:1289T-loop with 2 stacked bulged bases
geometric
HL_4WF9_032
HL_33597.3
HL_9NO7_0301/A/1324:1330Pseudoknot geometry with 3' bulge
geometric
HL_7A0S_033
HL_49081.1
HL_9NO7_0311/A/1363:1368GNRA
geometric
HL_9DFE_033
HL_34789.4
HL_9NO7_0321/A/1389:1398No text annotation
geometric
HL_5J7L_168
NA
HL_9NO7_0331/A/1451:1459No text annotation
geometric
HL_9DFE_035
HL_00557.1
HL_9NO7_0341/A/1492:1498Pseudoknot geometry with 3' bulge
geometric
HL_5J7L_170
NA
HL_9NO7_0351/A/1565:1568Mini UNCG
geometric
HL_9DFE_037
HL_90436.3
HL_9NO7_0361/A/1612:1619No text annotation
geometric
HL_9DFE_038
HL_28592.2
HL_9NO7_0371/A/1631:1635Pseudoknot geometry with 3' bulge
geometric
HL_9DFE_039
HL_49081.1
HL_9NO7_0381/A/1691:1696UNCG
geometric
HL_9DFE_040
HL_61337.3
HL_9NO7_0391/A/1720:1742GNRA
geometric
HL_9DFE_041
HL_34789.4
HL_9NO7_0401/A/1752:1756No text annotation
geometric
HL_9DFE_042
HL_80709.5
HL_9NO7_0411/A/1777:1787No text annotation
geometric
HL_5J7L_178
NA
HL_9NO7_0421/A/1806:1811GNRA
geometric
HL_9DFE_044
HL_34789.4
HL_9NO7_0431/A/1864:1878GNRA
geometric
HL_8CRE_058
NA
HL_9NO7_0441/A/1910:1920No text annotation
geometric
HL_9DFE_046
HL_82185.1
HL_9NO7_0451/A/1949:1957No text annotation
geometric
HL_5J7L_182
NA
HL_9NO7_0461/A/2027:2036No text annotation
geometric
HL_9DFE_048
HL_78372.1
HL_9NO7_0471/A/2205:2219No text annotation
HL_9NO7_0481/A/2248:2256No text annotation
geometric
HL_9DFE_051
HL_11974.2
HL_9NO7_0491/A/2264:2276No text annotation
geometric
HL_4WF9_050
HL_02042.1
HL_9NO7_0501/A/2304:2312No text annotation
geometric
HL_9DFE_198
HL_02452.1
HL_9NO7_0511/A/2324:2331Pseudoknot geometry
geometric
HL_9DFE_054
HL_52651.2
HL_9NO7_0521/A/2355:2362GNRA with extra cWW
geometric
HL_9DFE_055
HL_87268.2
HL_9NO7_0531/A/2374:2379GNRA
geometric
HL_5DDP_001
HL_34789.4
HL_9NO7_0541/A/2404:2413No text annotation
geometric
HL_9DFE_057
HL_51853.2
HL_9NO7_0551/A/2471:2479No text annotation
geometric
HL_9DFE_058
HL_52011.1
HL_9NO7_0561/A/2528:2535GNRA variation
geometric
HL_9DFE_059
HL_46665.2
HL_9NO7_0571/A/2551:2557No text annotation
geometric
HL_9DFE_060
HL_48677.1
HL_9NO7_0581/A/2594:2599GNRA
geometric
HL_4V9F_065
HL_34789.4
HL_9NO7_0591/A/2658:2663GNRA
geometric
HL_5J7L_197
NA
HL_9NO7_0601/A/2701:2706Other HL
geometric
HL_9DFE_063
HL_64036.2
HL_9NO7_0611/A/2745:2759No text annotation
geometric
HL_9DFE_064
HL_53269.2
HL_9NO7_0621/A/2819:2827No text annotation
geometric
HL_9DFE_065
HL_37889.1
HL_9NO7_0631/A/2856:2861GNRA
geometric
HL_8P9A_175
HL_34789.4
HL_9NO7_0641/B/34:48No text annotation
geometric
HL_4V9F_074
HL_97756.3
HL_9NO7_0651/B/38:44No text annotation
geometric
HL_1MJI_002
HL_59381.2
HL_9NO7_0661/B/86:91GNRA
geometric
HL_4V9F_072
HL_34789.4
HL_9NO7_0671/a/12:22No text annotation
geometric
HL_8CRE_191
HL_73535.1
HL_9NO7_0681/a/158:163GNRA
geometric
HL_7ENI_001
HL_34789.4
HL_9NO7_0691/a/189C:189HNo text annotation
geometric
HL_4LFB_004
HL_89167.2
HL_9NO7_0701/a/259:267GNRA related
geometric
HL_4LFB_006
HL_87268.2
HL_9NO7_0711/a/296:301GNRA
geometric
HL_5J7L_007
NA
HL_9NO7_0721/a/320:333No text annotation
geometric
HL_4LFB_008
HL_39665.1
HL_9NO7_0731/a/342:347UNCG
geometric
HL_4LFB_031
HL_61337.3
HL_9NO7_0741/a/379:384GNRA
geometric
HL_5J7L_010
NA
HL_9NO7_0751/a/419:424UNCG
geometric
HL_5J7L_175
NA
HL_9NO7_0761/a/458:473GNRA
geometric
HL_4LFB_012
HL_34789.4
HL_9NO7_0771/a/522:527GNRA variation
geometric
HL_4LFB_033
HL_34789.4
HL_9NO7_0781/a/617:623GNRA-like with tWH
geometric
HL_4LFB_014
HL_86621.1
HL_9NO7_0791/a/689:698No text annotation
geometric
HL_4LFB_015
HL_38491.2
HL_9NO7_0801/a/726:731GNRA
geometric
HL_4LFB_016
HL_34789.4
HL_9NO7_0811/a/786:796No text annotation
geometric
HL_4LFB_017
HL_38491.2
HL_9NO7_0821/a/838:848No text annotation
HL_9NO7_0831/a/862:867GNRA
geometric
HL_4LFB_019
HL_34789.4
HL_9NO7_0841/a/897:902GNRA
geometric
HL_4LFB_020
HL_34789.4
HL_9NO7_0851/a/963:972No text annotation
geometric
HL_4LFB_021
HL_97521.1
HL_9NO7_0861/a/1012:1017GNRA
geometric
HL_6WPI_001
HL_34789.4
HL_9NO7_0881/a/1076:1081GNRA
geometric
HL_4LFB_024
HL_34789.4
HL_9NO7_0891/a/1089:1096T-loop related
geometric
HL_4LFB_025
HL_63894.2
HL_9NO7_0901/a/1134:1140No text annotation
geometric
HL_5J7L_025
NA
HL_9NO7_0911/a/1165:1171GNRA
geometric
HL_6CB3_004
HL_34789.4
HL_9NO7_0921/a/1265:1270GNRA
geometric
HL_5J7L_027
NA
HL_9NO7_0931/a/1314:1323T-loop with 3 stacked bulged bases
geometric
HL_4LFB_029
HL_93658.1
HL_9NO7_0941/a/1356:1366No text annotation
geometric
HL_4LFB_030
HL_86432.1
HL_9NO7_0951/a/1445:1457No text annotation
geometric
HL_7MSF_001
HL_89167.2
HL_9NO7_0961/a/1515:1520GNRA
geometric
HL_4LFB_032
HL_34789.4
HL_9NO7_0971/x/31:39tRNA anticodon loop
geometric
HL_6UFG_007
HL_81376.3
HL_9NO7_0981/x/53:61T-loop with 2 stacked bulged bases
geometric
HL_8UO6_004
HL_33597.3

Problematic loops

#loop idProblemSequence
HL_9NO7_024No text annotation
HL_9NO7_087No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9NO7_0011/A/24:30,
1/A/510:516
Triple sheared with non-canonical cWW
geometric
IL_5J7L_245
NA
IL_9NO7_0021/A/36:37,
1/A/442:444
Single bulged A
geometric
IL_7A0S_002
IL_14190.2
IL_9NO7_0031/A/42:43,
1/A/434:436
Minor groove platform
geometric
IL_9DFE_348
IL_34520.3
IL_9NO7_0041/A/81:85,
1/A/97:105
Kink-turn
geometric
IL_9DFE_004
IL_71972.1
IL_9NO7_0051/A/183:184,
1/A/212:214
Single stack bend
geometric
IL_9DFE_005
IL_15011.2
IL_9NO7_0061/A/188:194,
1/A/201:208
8x7 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_250
NA
IL_9NO7_0071/A/239:245,
1/A/253:258
7x6 Sarcin-Ricin; G-bulge
geometric
IL_9DFE_007
IL_02666.1
IL_9NO7_0081/A/272D:272E,
1/A/363E:364
Major groove platform
geometric
IL_9DFE_008
IL_48076.8
IL_9NO7_0091/A/280:284,
1/A/357:360
No text annotation
geometric
IL_9DFE_009
IL_74317.1
IL_9NO7_0101/A/288:290,
1/A/350:353
Isolated tHS basepair with bulges
geometric
IL_4V9F_076
IL_87316.2
IL_9NO7_0111/A/293:295,
1/A/343:347
No text annotation
geometric
IL_9DFE_011
IL_76658.1
IL_9NO7_0121/A/481:484,
1/A/496:509
No text annotation
geometric
IL_9DFE_012
IL_44923.1
IL_9NO7_0131/A/564:566,
1/A/575:577
Isolated non-canonical cWW pair
geometric
IL_5J7L_257
NA
IL_9NO7_0141/A/606:610,
1/A/618:622
No text annotation
geometric
IL_9DFE_014
IL_66798.3
IL_9NO7_0151/A/672:674,
1/A/806:808
Isolated non-canonical cWW pair
geometric
IL_5J7L_259
NA
IL_9NO7_0161/A/674:678,
1/A/799:806
No text annotation
geometric
IL_9DFE_016
IL_73855.1
IL_9NO7_0171/A/697:698,
1/A/763:765
Single bulged A
geometric
IL_5J7L_261
NA
IL_9NO7_0181/A/702:703,
1/A/728:730
Single bulged G
geometric
IL_5J7L_262
NA
IL_9NO7_0191/A/703:707,
1/A/724:728
Triple sheared
geometric
IL_9DFE_019
IL_15190.2
IL_9NO7_0201/A/738:741,
1/A/756:758
Major groove platform with extra cWW
geometric
IL_7A0S_019
IL_36931.2
IL_9NO7_0211/A/775:777,
1/A/787:791
No text annotation
geometric
IL_9DFE_021
IL_89509.1
IL_9NO7_0221/A/837:838,
1/A/940:942
Single stack bend
geometric
IL_7A0S_022
IL_15011.2
IL_9NO7_0231/A/844:846,
1/A/931:934
Other IL
geometric
IL_9DFE_023
IL_10892.2
IL_9NO7_0241/A/844:850,
1/A/927:934
No text annotation
geometric
IL_9DFE_024
IL_68243.1
IL_9NO7_0251/A/846:850,
1/A/927:931
Stack outside cWW
geometric
IL_9DFE_025
IL_08938.1
IL_9NO7_0261/A/858:862,
1/A/915:919
5x5 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_9DFE_026
IL_38862.5
IL_9NO7_0271/A/862:863,
1/A/913:915
Minor groove platform
geometric
IL_4V9F_034
IL_34520.3
IL_9NO7_0281/A/864:868,
1/A/909:912
C-loop
geometric
IL_4WF9_033
IL_16301.1
IL_9NO7_0301/A/875:877,
1/A/899:902
No text annotation
geometric
IL_9DFE_030
IL_82096.1
IL_9NO7_0311/A/877:879,
1/A/898:899
Minor groove platform
geometric
IL_8CRE_457
IL_34520.3
IL_9NO7_0331/A/952:954,
1/A/963:965
Isolated non-canonical cWW pair
geometric
IL_7A0S_031
IL_01003.3
IL_9NO7_0341/A/994:996,
1/A/1159:1160
Single bulged C
geometric
IL_5J7L_276
NA
IL_9NO7_0351/A/998:1002,
1/A/1153:1157
UAA/GAN
geometric
IL_4WF9_036
IL_08938.1
IL_9NO7_0361/A/1004:1011,
1/A/1150:1151
SSU/LSU pseudoknot
geometric
IL_5J7L_278
NA
IL_9NO7_0371/A/1011:1013,
1/A/1149:1150
Single bulged U
geometric
IL_5J7L_279
NA
IL_9NO7_0381/A/1018:1024,
1/A/1140:1144
Kink-turn related
geometric
IL_5J7L_280
NA
IL_9NO7_0391/A/1024:1030,
1/A/1124:1140
No text annotation
geometric
IL_9DFE_039
IL_50715.4
IL_9NO7_0401/A/1031:1034,
1/A/1121:1123
Isolated non-canonical cWW pair
geometric
IL_5J7L_282
NA
IL_9NO7_0411/A/1043:1051,
1/A/1108:1112
Kink-turn
geometric
IL_5J7L_284
NA
IL_9NO7_0421/A/1196:1198,
1/A/1247:1250
Isolated cWS basepair
geometric
IL_4WF9_044
IL_42997.5
IL_9NO7_0431/A/1202:1206,
1/A/1240:1243
No text annotation
geometric
IL_9DFE_045
IL_68574.5
IL_9NO7_0441/A/1208:1215,
1/A/1234:1238
Kink-turn
geometric
IL_5J7L_288
NA
IL_9NO7_0451/A/1219:1221,
1/A/1229:1230
Single bulged A
geometric
IL_9DFE_047
IL_14190.2
IL_9NO7_0461/A/1262:1269,
1/A/2011:2017
8x7 Sarcin-Ricin; G-bulge
geometric
IL_9DFE_048
IL_62167.3
IL_9NO7_0471/A/1310:1313,
1/A/1603:1604
Major groove platform; stack outside cWW
geometric
IL_9DFE_049
IL_74641.2
IL_9NO7_0481/A/1319:1323,
1/A/1331:1333
C-loop
geometric
IL_9DFE_050
IL_63596.12
IL_9NO7_0491/A/1351:1355,
1/A/1376:1380
UAA/GAN
geometric
IL_9DFE_051
IL_08938.1
IL_9NO7_0501/A/1357:1361,
1/A/1370:1374
tSH-tHW-tHS
geometric
IL_9DFE_052
IL_05821.1
IL_9NO7_0511/A/1415:1416,
1/A/1582:1587
No text annotation
geometric
IL_9DFE_053
IL_52564.1
IL_9NO7_0521/A/1417:1421,
1/A/1577:1581
UAA/GAN
geometric
IL_5J7L_295
NA
IL_9NO7_0531/A/1433:1435,
1/A/1557:1560
No text annotation
geometric
IL_9DFE_055
IL_31990.1
IL_9NO7_0541/A/1437:1440,
1/A/1551:1555
No text annotation
geometric
IL_9DFE_056
IL_74317.1
IL_9NO7_0551/A/1448:1450,
1/A/1462:1463
Single stack bend
geometric
IL_9DFE_057
IL_15011.2
IL_9NO7_0561/A/1450A:1451,
1/A/1459:1461
Single bulged A
geometric
IL_4WF9_022
IL_14190.2
IL_9NO7_0571/A/1469:1473,
1/A/1518:1523
UAA/GAN variation
geometric
IL_9DFE_059
IL_45790.2
IL_9NO7_0581/A/1481:1482,
1/A/1506:1510
No text annotation
geometric
IL_9DFE_060
IL_46086.1
IL_9NO7_0591/A/1489:1491,
1/A/1499:1500
Single bulged A
geometric
IL_5J7L_302
NA
IL_9NO7_0601/A/1526:1529,
1/A/1540:1546
No text annotation
geometric
IL_9DFE_062
IL_25943.1
IL_9NO7_0611/A/1651:1656,
1/A/2004:2006
No text annotation
geometric
IL_5J7L_304
NA
IL_9NO7_0621/A/1663:1665,
1/A/1995:1997
Isolated tWW turn
geometric
IL_7A0S_060
IL_10432.1
IL_9NO7_0631/A/1666:1669,
1/A/1993:1994
Major groove platform; stack outside cWW
geometric
IL_9DFE_065
IL_74641.2
IL_9NO7_0641/A/1666:1674,
1/A/1990:1994
No text annotation
geometric
IL_9DFE_066
IL_80252.1
IL_9NO7_0651/A/1669:1674,
1/A/1990:1993
No text annotation
geometric
IL_9DFE_067
IL_28217.1
IL_9NO7_0661/A/1686:1691,
1/A/1696:1702
tSH-tSH-tHH-tHS
geometric
IL_5J7L_308
NA
IL_9NO7_0671/A/1770:1771,
1/A/1980:1982
Single bulged A
geometric
IL_9DFE_069
IL_14190.2
IL_9NO7_0681/A/1798:1804,
1/A/1813:1821
Kink-turn related
geometric
IL_5J7L_313
NA
IL_9NO7_0691/A/1837:1840,
1/A/1902:1903
Minor groove platform, major groove intercalation
geometric
IL_5J7L_314
NA
IL_9NO7_0701/A/1841:1842,
1/A/1898:1901
No text annotation
geometric
IL_9DFE_072
IL_77710.1
IL_9NO7_0711/A/1846:1849,
1/A/1893:1894
Major groove minor groove platform; mini C-loop
geometric
IL_1S03_007
IL_73108.2
IL_9NO7_0721/A/1851:1855,
1/A/1887:1891
UAA/GAN with extra stack
geometric
IL_9DFE_074
IL_89021.4
IL_9NO7_0731/A/1856:1860,
1/A/1882:1886
Triple sheared
geometric
IL_9DFE_075
IL_15190.2
IL_9NO7_0741/A/1933:1934,
1/A/1964:1967
Bulged stacked bases
geometric
IL_5J7L_318
NA
IL_9NO7_0751/A/1934:1945,
1/A/1961:1964
No text annotation
IL_9NO7_0761/A/2050:2052,
1/A/2617:2618
Major groove platform
geometric
IL_9DFE_078
IL_48076.8
IL_9NO7_0771/A/2054:2057,
1/A/2611:2615
No text annotation
geometric
IL_9DFE_079
IL_70335.1
IL_9NO7_0781/A/2067:2069,
1/A/2442:2443
Single bulged U
geometric
IL_9DFE_080
IL_97561.3
IL_9NO7_0791/A/2070:2071,
1/A/2438:2441
Minor groove platform
geometric
IL_8P9A_322
IL_34520.3
IL_9NO7_0801/A/2081:2083,
1/A/2236:2239
No text annotation
geometric
IL_9DFE_082
IL_87316.2
IL_9NO7_0811/A/2085:2087,
1/A/2232:2234
Isolated non-canonical cWW pair
geometric
IL_5J7L_326
NA
IL_9NO7_0821/A/2297:2299,
1/A/2317:2321
No text annotation
geometric
IL_9DFE_088
IL_14250.1
IL_9NO7_0831/A/2350:2353,
1/A/2364:2367
Double sheared
geometric
IL_9DFE_089
IL_58355.2
IL_9NO7_0841/A/2401:2403,
1/A/2414:2415
Major groove platform
geometric
IL_9DFE_090
IL_48076.8
IL_9NO7_0851/A/2453:2454,
1/A/2498:2500
Single stack bend
geometric
IL_9DFE_091
IL_15011.2
IL_9NO7_0861/A/2454:2455,
1/A/2496:2498
Major groove platform
geometric
IL_9DFE_092
IL_48076.8
IL_9NO7_0871/A/2457:2459,
1/A/2493:2494
Major groove platform
geometric
IL_9DFE_093
IL_48076.8
IL_9NO7_0881/A/2459:2461,
1/A/2489:2493
Major groove minor groove platform with extra cWW
geometric
IL_4WF9_092
IL_36931.2
IL_9NO7_0891/A/2466:2470,
1/A/2480:2484
Double sheared with non-canonical cWW
geometric
IL_9DFE_095
IL_87767.2
IL_9NO7_0901/A/2507:2508,
1/A/2580:2582
Major groove platform
geometric
IL_4V9F_086
IL_46637.2
IL_9NO7_0911/A/2510:2512,
1/A/2574:2578
Isolated non-canonical cWW with bulges
geometric
IL_5J7L_340
NA
IL_9NO7_0921/A/2512:2513,
1/A/2571:2574
No text annotation
geometric
IL_9DFE_098
IL_44609.2
IL_9NO7_0931/A/2522:2523,
1/A/2540:2543
Major groove platform with intercalation
geometric
IL_4WF9_097
IL_94991.2
IL_9NO7_0941/A/2591:2592,
1/A/2601:2603
Single bulged A
geometric
IL_1U9S_001
IL_14190.2
IL_9NO7_0951/A/2636:2640,
1/A/2774:2782
tSH-tHS-tHW
geometric
IL_4WF9_099
IL_04638.4
IL_9NO7_0961/A/2652:2658,
1/A/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_5J7L_346
NA
IL_9NO7_0971/A/2680:2684,
1/A/2725:2727
C-loop
geometric
IL_9DFE_103
IL_63596.12
IL_9NO7_0981/A/2687:2691,
1/A/2718:2722
UAA/GAN related, with intercalation
geometric
IL_9DFE_104
IL_82016.1
IL_9NO7_0991/A/2695:2696,
1/A/2711:2714
No text annotation
geometric
IL_9DFE_105
IL_44609.2
IL_9NO7_1001/A/2737:2742,
1/A/2762:2767
UAA/GAN with extra cWW
geometric
IL_9DFE_106
IL_91079.1
IL_9NO7_1011/A/2838:2839,
1/A/2878:2880
Major groove intercalation
geometric
IL_9DFE_107
IL_05642.2
IL_9NO7_1021/A/2843:2846,
1/A/2870:2874
No text annotation
geometric
IL_9DFE_108
IL_34942.1
IL_9NO7_1031/A/2847:2852,
1/A/2865:2869
tHS double platform
geometric
IL_5J7L_354
NA
IL_9NO7_1041/B/17:18,
1/B/65:67
Major groove intercalation
geometric
IL_9DFE_110
IL_14190.2
IL_9NO7_1051/B/23:28,
1/B/56:60
No text annotation
geometric
IL_9DFE_111
IL_18472.5
IL_9NO7_1061/B/30:31,
1/B/51:54
No text annotation
geometric
IL_9DFE_112
IL_73108.2
IL_9NO7_1071/B/34:38,
1/B/44:48
Symmetric double minor groove platform
geometric
IL_4V9F_104
IL_58103.12
IL_9NO7_1081/B/71:79,
1/B/98:106
Bacterial 5S Loop E
geometric
IL_9DFE_114
IL_71138.1
IL_9NO7_1091/a/30:32,
1/a/552:553
Single bulged G
geometric
IL_4LFB_001
IL_28408.2
IL_9NO7_1101/a/44:45,
1/a/396:398
Single bulged A
geometric
IL_4LFB_002
IL_14190.2
IL_9NO7_1111/a/47:52,
1/a/359:361
No text annotation
geometric
IL_4LFB_003
IL_32983.2
IL_9NO7_1121/a/54:56,
1/a/356:357
Minor groove platform
geometric
IL_8P9A_377
IL_34520.3
IL_9NO7_1131/a/63:66,
1/a/103:104
Multiple bulged bases
geometric
IL_5J7L_005
NA
IL_9NO7_1141/a/67:69,
1/a/100:102
Isolated non-canonical cWW pair
geometric
IL_4LFB_006
IL_01003.3
IL_9NO7_1151/a/129:131,
1/a/231:232
Multiple bulged bases
geometric
IL_4LFB_007
IL_75289.1
IL_9NO7_1161/a/132:136,
1/a/227:230
No text annotation
geometric
IL_4LFB_008
IL_60988.2
IL_9NO7_1171/a/148:153,
1/a/168:174
tWH-tWH-tHW-tHW
geometric
IL_4LFB_009
IL_00680.1
IL_9NO7_1181/a/186:188,
1/a/189L:191
Isolated non-canonical cWW pair
geometric
IL_4LFB_010
IL_01003.3
IL_9NO7_1191/a/242:247,
1/a/277:284
Kink-turn with non-sequential stacking
geometric
IL_4LFB_011
IL_46174.4
IL_9NO7_1201/a/249:252,
1/a/274:275
No text annotation
geometric
IL_4LFB_012
IL_22002.1
IL_9NO7_1211/a/292:293,
1/a/304:308
C-loop
geometric
IL_4LFB_013
IL_06671.1
IL_9NO7_1221/a/367:369,
1/a/392:393
Single bulged U
geometric
IL_4LFB_014
IL_97561.3
IL_9NO7_1231/a/371:375,
1/a/389:390
C-loop
geometric
IL_5J7L_018
NA
IL_9NO7_1241/a/375:376,
1/a/387:389
Single bulged G
geometric
IL_5J7L_019
NA
IL_9NO7_1251/a/409:416,
1/a/427:433
No text annotation
geometric
IL_4LFB_017
IL_62329.1
IL_9NO7_1261/a/446:450,
1/a/483:488
6x5 Sarcin-Ricin; G-bulge
geometric
IL_4LFB_018
IL_82100.1
IL_9NO7_1271/a/450:455,
1/a/476:483
No text annotation
geometric
IL_4LFB_019
IL_31561.1
IL_9NO7_1281/a/504:511,
1/a/540:541
SSU/LSU pseudoknot
geometric
IL_4LFB_020
IL_11411.1
IL_9NO7_1291/a/515:521,
1/a/528:536
No text annotation
geometric
IL_8P9A_404
IL_52042.1
IL_9NO7_1301/a/569:575,
1/a/880:881
No text annotation
geometric
IL_4LFB_022
IL_20847.1
IL_9NO7_1311/a/580:584,
1/a/757:761
tSH-tHW-tHS
geometric
IL_4LFB_023
IL_05821.1
IL_9NO7_1321/a/594:596,
1/a/644:645
Major groove platform
geometric
IL_4LFB_024
IL_48076.8
IL_9NO7_1331/a/597:598,
1/a/640:643
Major groove minor groove platform; mini C-loop
geometric
IL_4LFB_025
IL_73108.2
IL_9NO7_1341/a/605:612,
1/a/628:633
No text annotation
geometric
IL_4LFB_026
IL_04211.1
IL_9NO7_1351/a/654:655,
1/a/751:754
Major groove platform; stack outside cWW
geometric
IL_4LFB_027
IL_74641.2
IL_9NO7_1361/a/657:658,
1/a/747:749
Major groove platform
geometric
IL_4LFB_028
IL_48076.8
IL_9NO7_1371/a/662:666,
1/a/740:743
Tandem non-canonical cWW pairs
geometric
IL_4LFB_029
IL_15225.2
IL_9NO7_1381/a/673:677,
1/a/713:717
Triple non-canonical cWW pairs
geometric
IL_4LFB_065
IL_71154.3
IL_9NO7_1391/a/683:688,
1/a/699:707
Kink-turn
geometric
IL_4LFB_031
IL_95727.1
IL_9NO7_1401/a/774:778,
1/a/804:805
Left turn
geometric
IL_4LFB_032
IL_29346.3
IL_9NO7_1411/a/779:783,
1/a/799:803
tSH-tHW-tHS
geometric
IL_4LFB_033
IL_05821.1
IL_9NO7_1421/a/887:894,
1/a/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
geometric
IL_4LFB_034
IL_84044.1
IL_9NO7_1431/a/922:923,
1/a/1393:1395
Single bulged A
geometric
IL_5J7L_039
NA
IL_9NO7_1441/a/925:927,
1/a/1390:1391
Single bulged G
geometric
IL_4LFB_036
IL_28408.2
IL_9NO7_1451/a/933:935,
1/a/1380:1384
Minor groove platform
geometric
IL_5J7L_041
NA
IL_9NO7_1461/a/953:954,
1/a/1226:1228
Minor groove platform
geometric
IL_8CRE_447
IL_34520.3
IL_9NO7_1471/a/993:997,
1/a/1044:1045
Minor groove platform
geometric
IL_4LFB_039
IL_61370.1
IL_9NO7_1481/a/1048:1050,
1/a/1208:1209
Single bulged U
geometric
IL_4LFB_042
IL_97561.3
IL_9NO7_1491/a/1052:1056,
1/a/1204:1206
Isolated cWS basepair
geometric
IL_4LFB_044
IL_82453.1
IL_9NO7_1501/a/1057:1058,
1/a/1199:1203
Minor groove platform
geometric
IL_4LFB_045
IL_24264.1
IL_9NO7_1511/a/1060:1061,
1/a/1195:1197
Single bulged U
geometric
IL_4LFB_046
IL_97561.3
IL_9NO7_1521/a/1061:1063,
1/a/1193:1195
Isolated non-canonical cWW pair
geometric
IL_4LFB_047
IL_68118.3
IL_9NO7_1531/a/1124:1127,
1/a/1145:1149
No text annotation
IL_9NO7_1541/a/1129:1132,
1/a/1142:1143
Minor groove platform
geometric
IL_3MXH_005
IL_87975.1
IL_9NO7_1551/a/1158:1161,
1/a/1175:1181
No text annotation
geometric
IL_5J7L_053
NA
IL_9NO7_1561/a/1247:1253,
1/a/1284:1290
No text annotation
geometric
IL_4LFB_051
IL_12056.1
IL_9NO7_1571/a/1255:1258,
1/a/1277:1282
No text annotation
IL_9NO7_1581/a/1259:1260,
1/a/1274:1276
No text annotation
IL_9NO7_1591/a/1260:1262,
1/a/1273:1274
Minor groove platform
geometric
IL_4LFB_054
IL_34520.3
IL_9NO7_1601/a/1303:1308,
1/a/1329:1334
No text annotation
geometric
IL_4LFB_055
IL_57885.2
IL_9NO7_1611/a/1399:1401,
1/a/1501:1504
No text annotation
geometric
IL_8CRE_466
IL_18228.1
IL_9NO7_1621/a/1401:1404,
1/a/1497:1501
No text annotation
geometric
IL_4LFB_068
IL_25873.2
IL_9NO7_1631/a/1405:1407,
1/a/1494:1496
Isolated non-canonical cWW pair
geometric
IL_5J7L_363
NA
IL_9NO7_1641/a/1407:1409,
1/a/1491:1494
Decoding loop related
geometric
IL_2O3X_003
IL_53541.1
IL_9NO7_1651/a/1412:1414,
1/a/1486:1488
Isolated non-canonical cWW pair
geometric
IL_5J7L_061
NA
IL_9NO7_1661/a/1416:1419,
1/a/1481:1484
Double sheared
geometric
IL_5J7L_062
NA
IL_9NO7_1671/a/1431:1435,
1/a/1466:1469
UAA/GAN variation
geometric
IL_4LFB_062
IL_77691.7
IL_9NO7_1681/a/1435:1437,
1/a/1464:1466
Isolated non-canonical cWW pair
geometric
IL_4LFB_063
IL_01003.3
IL_9NO7_1691/a/1440:1443,
1/a/1459:1461
Isolated basepair with bulged bases
geometric
IL_5UNE_002
IL_34117.1

Problematic loops

#loop idProblemSequence
IL_9NO7_029Isolated near basepair
IL_9NO7_032Single bulged A

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9NO7_0011/A/30:31,
1/A/474:481,
1/A/509:510
No text annotation
geometric
J3_5J7L_036
NA
J3_9NO7_0021/A/30:31,
1/A/474:484,
1/A/496:510
No text annotation
geometric
J3_9DFE_002
J3_17917.1
J3_9NO7_0031/A/32:35,
1/A/445:461,
1/A/468:473
No text annotation
geometric
J3_9DFE_003
J3_07616.1
J3_9NO7_0041/A/56:57,
1/A/70:76,
1/A/110:114
No text annotation
geometric
J3_4V9F_014
J3_01004.1
J3_9NO7_0051/A/269:271B,
1/A/271V:272B,
1/A/366:370
No text annotation
geometric
J3_9DFE_005
J3_97971.2
J3_9NO7_0061/A/297:301,
1/A/316:325,
1/A/337:341
No text annotation
geometric
J3_9DFE_006
J3_77124.1
J3_9NO7_0071/A/683:689,
1/A/773:775,
1/A/791:794
No text annotation
geometric
J3_9DFE_007
J3_46658.1
J3_9NO7_0081/A/698:700,
1/A/732:736,
1/A/760:763
No text annotation
geometric
J3_4WF9_003
J3_69816.1
J3_9NO7_0091/A/1298:1303,
1/A/1625:1627,
1/A/1639:1642
No text annotation
geometric
J3_9DFE_010
J3_32852.7
J3_9NO7_0101/A/1306:1309,
1/A/1605:1611,
1/A/1620:1622
No text annotation
geometric
J3_9DFE_011
J3_47341.1
J3_9NO7_0111/A/1344:1350,
1/A/1381:1385,
1/A/1402:1403
No text annotation
geometric
J3_9DFE_012
J3_94309.1
J3_9NO7_0121/A/1424:1429,
1/A/1564:1565,
1/A/1568:1574
No text annotation
geometric
J3_7A0S_019
J3_34864.3
J3_9NO7_0131/A/2091:2093,
1/A/2196:2200,
1/A/2223:2228
No text annotation
geometric
J3_9DFE_014
J3_17460.1
J3_9NO7_0141/A/2282:2284,
1/A/2384:2395,
1/A/2421:2427
No text annotation
geometric
J3_9DFE_015
J3_04772.1
J3_9NO7_0151/A/2295:2297,
1/A/2321:2323,
1/A/2332:2337
No text annotation
geometric
J3_9DFE_016
J3_05327.1
J3_9NO7_0161/A/2517:2520,
1/A/2545:2547,
1/A/2561:2567
No text annotation
geometric
J3_7A0S_011
J3_32601.6
J3_9NO7_0171/A/2789:2791,
1/A/2805:2811,
1/A/2889:2894
No text annotation
geometric
J3_9DFE_018
J3_24127.1
J3_9NO7_0181/A/2814:2815,
1/A/2831:2836,
1/A/2882:2886
No text annotation
geometric
J3_9DFE_019
J3_76911.2
J3_9NO7_0191/B/11:16,
1/B/68:69,
1/B/108:110
No text annotation
geometric
J3_9DFE_020
J3_26985.1
J3_9NO7_0201/a/46:47,
1/a/361:367,
1/a/393:395
No text annotation
geometric
J3_4LFB_010
J3_58657.1
J3_9NO7_0211/a/46:52,
1/a/359:367,
1/a/393:395
No text annotation
geometric
J3_4LFB_014
J3_63856.1
J3_9NO7_0221/a/586:588,
1/a/651:654,
1/a/754:755
No text annotation
J3_9NO7_0231/a/586:588,
1/a/651:655,
1/a/751:755
No text annotation
J3_9NO7_0241/a/672:673,
1/a/717:725,
1/a/732:734
No text annotation
geometric
J3_4LFB_012
J3_74074.1
J3_9NO7_0251/a/826:829,
1/a/857:861,
1/a/868:874
No text annotation
geometric
J3_4LFB_001
J3_02285.1
J3_9NO7_0261/a/936:939,
1/a/1344:1350,
1/a/1372:1379
No text annotation
geometric
J3_4LFB_002
J3_85722.1
J3_9NO7_0271/a/943:946,
1/a/1235:1237,
1/a/1337:1340
No text annotation
geometric
J3_5J7L_005
NA
J3_9NO7_0281/a/955:962,
1/a/973:984,
1/a/1221:1225
No text annotation
geometric
J3_4LFB_004
J3_88451.1
J3_9NO7_0291/a/990:993,
1/a/1045:1047,
1/a/1210:1215
No text annotation
geometric
J3_4LFB_005
J3_84394.1
J3_9NO7_0301/a/990:997,
1/a/1044:1047,
1/a/1210:1215
No text annotation
geometric
J3_4LFB_016
J3_28881.1
J3_9NO7_0321/a/1063:1068,
1/a/1107:1113,
1/a/1187:1193
No text annotation
geometric
J3_4LFB_007
J3_01343.1
J3_9NO7_0331/a/1073:1074,
1/a/1083:1086,
1/a/1099:1102
No text annotation
geometric
J3_4LFB_017
J3_11018.1
J3_9NO7_0341/a/1116:1118,
1/a/1155:1158,
1/a/1181:1184
No text annotation
geometric
J3_5J7L_010
NA
J3_9NO7_0351/a/1116:1118,
1/a/1155:1161,
1/a/1175:1184
No text annotation
geometric
J3_5J7L_054
NA
J3_9NO7_0361/a/1237:1241,
1/a/1296:1303,
1/a/1334:1337
No text annotation
geometric
J3_4LFB_009
J3_03192.1
J4_9NO7_0011/A/268:269,
1/A/370:375,
1/A/399:406,
1/A/421:424
No text annotation
J4_9NO7_0021/A/297:301,
1/A/316:319,
1/A/323:325,
1/A/337:341
No text annotation
J4_9NO7_0031/A/1270:1276,
1/A/1294:1295,
1/A/1645:1648,
1/A/2009:2010
No text annotation
J4_9NO7_0041/A/1310:1314,
1/A/1338:1343,
1/A/1404:1405,
1/A/1597:1604
No text annotation
J4_9NO7_0051/A/1313:1314,
1/A/1338:1343,
1/A/1404:1405,
1/A/1597:1603
No text annotation
J4_9NO7_0061/A/1444:1445A,
1/A/1466:1467,
1/A/1525:1526,
1/A/1546:1547
No text annotation
J4_9NO7_0071/A/1772:1776,
1/A/1788:1792,
1/A/1827:1830,
1/A/1975:1979
No text annotation
J4_9NO7_0081/A/1833:1835,
1/A/1905:1906,
1/A/1924:1933,
1/A/1967:1972
No text annotation
J4_9NO7_0091/A/2285:2289,
1/A/2343:2347,
1/A/2370:2372,
1/A/2381:2383
No text annotation
J4_9NO7_0101/A/2643:2646,
1/A/2674:2676,
1/A/2731:2735,
1/A/2769:2771
No text annotation
J4_9NO7_0111/a/115:122,
1/a/239:240,
1/a/286:289,
1/a/311:312
No text annotation
J4_9NO7_0121/a/142:144,
1/a/178:183,
1/a/194:198,
1/a/219:221
No text annotation
J4_9NO7_0131/a/575:577,
1/a/764:769,
1/a/810:821,
1/a/879:880
No text annotation
J4_9NO7_0141/x/7:10,
1/x/25:27,
1/x/43:49,
1/x/65:66
No text annotation
J5_9NO7_0011/A/47:54,
1/A/116:121,
1/A/130:131,
1/A/148:150,
1/A/176:178
No text annotation
J5_9NO7_0021/A/268:271B,
1/A/271V:272B,
1/A/366:375,
1/A/399:406,
1/A/421:424
No text annotation
J5_9NO7_0031/A/531:533,
1/A/560:564,
1/A/577:579,
1/A/1261:1262,
1/A/2017:2018
No text annotation
J5_9NO7_0041/A/584:589,
1/A/668:671,
1/A/809:812,
1/A/1195:1196,
1/A/1250:1256
No text annotation
J5_9NO7_0051/A/1674:1682,
1/A/1706:1707,
1/A/1751:1752,
1/A/1756:1764,
1/A/1988:1990
No text annotation
J5_9NO7_0061/A/2057:2064,
1/A/2446:2453,
1/A/2500:2507,
1/A/2582:2588,
1/A/2606:2611
No text annotation
J5_9NO7_0071/A/2074:2077,
1/A/2243:2246,
1/A/2258:2259,
1/A/2281:2282,
1/A/2427:2435
No text annotation
J5_9NO7_0081/a/36:39,
1/a/403:406,
1/a/436:442,
1/a/492:500,
1/a/545:548
No text annotation
J5_9NO7_0091/a/58:61,
1/a/106:113,
1/a/314:316,
1/a/337:339,
1/a/350:354
No text annotation
J6_9NO7_0011/A/44:45,
1/A/179:183,
1/A/214:224,
1/A/231:235,
1/A/262:266,
1/A/426:433
No text annotation
J6_9NO7_0021/A/2074:2077,
1/A/2243:2246,
1/A/2258:2259,
1/A/2281:2284,
1/A/2384:2395,
1/A/2421:2435
No text annotation
J7_9NO7_0011/A/8:15,
1/A/525:531,
1/A/2018:2023,
1/A/2040:2043,
1/A/2625:2630,
1/A/2788:2789,
1/A/2894:2895
No text annotation
J7_9NO7_0021/A/817:822,
1/A/835:836,
1/A/943:946,
1/A/971:976,
1/A/987:991,
1/A/1163:1164,
1/A/1185:1190
No text annotation

Problematic loops

#loop idProblemSequence
J3_9NO7_031No text annotation

Coloring options:
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