HL_9NO7_029

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NO7_029 not in the Motif Atlas

Geometric match to HL_4WF9_032

Geometric discrepancy: 0.0658

The information below is about HL_4WF9_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9NO7|1|A|G|1281
9NO7|1|A|U|1282
9NO7|1|A|G|1283
9NO7|1|A|A|1284
9NO7|1|A|G|1285
9NO7|1|A|A|1286
9NO7|1|A|A|1287
9NO7|1|A|U|1288
9NO7|1|A|C|1289

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L17

Chain W

50S ribosomal protein L22