HL_9NO7_049

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

9NO7|1|A|A|2268, 9NO7|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NO7_049 not in the Motif Atlas

Geometric match to HL_4WF9_050

Geometric discrepancy: 0.064

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

9NO7|1|A|C|2264
9NO7|1|A|U|2265
9NO7|1|A|A|2266
9NO7|1|A|A|2267
9NO7|1|A|A|2268
9NO7|1|A|A|2269
9NO7|1|A|G|2270
9NO7|1|A|G|2271
9NO7|1|A|U|2272
9NO7|1|A|A|2273
9NO7|1|A|A|2274
9NO7|1|A|C|2275
9NO7|1|A|G|2276

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L27

Chain B

5S ribosomal RNA; 5S rRNA

Chain Q

50S ribosomal protein L16