HL_9NO7_052

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

CCUGCAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NO7_052 not in the Motif Atlas

Geometric match to HL_9DFE_055

Geometric discrepancy: 0.0823

The information below is about HL_9DFE_055

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9NO7|1|A|C|2355
9NO7|1|A|C|2356
9NO7|1|A|U|2357
9NO7|1|A|G|2358
9NO7|1|A|C|2359
9NO7|1|A|A|2360
9NO7|1|A|A|2361
9NO7|1|A|G|2362

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L27

Chain 8

50S ribosomal protein L35

Chain P

50S ribosomal protein L15