HL_9NO7_054

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

9NO7|1|A|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NO7_054 not in the Motif Atlas

Geometric match to HL_9DFE_057

Geometric discrepancy: 0.0739

The information below is about HL_9DFE_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9NO7|1|A|C|2404
9NO7|1|A|G|2405
9NO7|1|A|U|2406
9NO7|1|A|G|2407
9NO7|1|A|U|2408
9NO7|1|A|G|2409
9NO7|1|A|G|2410
9NO7|1|A|A|2411
9NO7|1|A|A|2412
9NO7|1|A|G|2413

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain P

50S ribosomal protein L15