HL_9NO7_061

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9NO7|1|A|G|2751, 9NO7|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NO7_061 not in the Motif Atlas

Geometric match to HL_9DFE_064

Geometric discrepancy: 0.0842

The information below is about HL_9DFE_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

9NO7|1|A|C|2745
9NO7|1|A|U|2746
9NO7|1|A|G|2747
9NO7|1|A|A|2748
9NO7|1|A|A|2749
9NO7|1|A|A|2750
9NO7|1|A|G|2751
9NO7|1|A|C|2752
9NO7|1|A|A|2753
9NO7|1|A|U|2754
9NO7|1|A|C|2755
9NO7|1|A|U|2756
9NO7|1|A|A|2757
9NO7|1|A|A|2758
9NO7|1|A|G|2759

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 9

50S ribosomal protein L36

Chain H

50S ribosomal protein L6

Chain N

50S ribosomal protein L13