HL_9NO7_098
3D structure
- PDB id
- 9NO7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.13 Å
Loop
- Sequence
- G(5MU)(PSU)CGACUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9NO7_098 not in the Motif Atlas
- Geometric match to HL_8UO6_004
- Geometric discrepancy: 0.0773
- The information below is about HL_8UO6_004
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
9NO7|1|x|G|53
9NO7|1|x|5MU|54
9NO7|1|x|PSU|55
9NO7|1|x|C|56
9NO7|1|x|G|57
9NO7|1|x|A|58
9NO7|1|x|C|59
9NO7|1|x|U|60
9NO7|1|x|C|61
Current chains
- Chain x
- P-site Peptidyl-tRNA fMEAAAKC-tRNAcys RNA-part
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain G
- 50S ribosomal protein L5
- Chain Q
- 50S ribosomal protein L16
Coloring options: