HL_9NPY_007

3D structure

PDB id

9NPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NPY_007 not in the Motif Atlas

Geometric match to HL_3E5C_002

Geometric discrepancy: 0.0889

The information below is about HL_3E5C_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9NPY|1|i|C|1565
9NPY|1|i|G|1566
9NPY|1|i|G|1567
9NPY|1|i|C|1568
9NPY|1|i|A|1569
9NPY|1|i|G|1570

Current chains

Chain i

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein uS13, RPS18

Chain T

40S ribosomal protein eS19, RPS19