9NPY Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9NPY_001 | 1/i/1245:1254 | No text annotation | geometric HL_8P9A_215 HL_50779.4 | |
| HL_9NPY_002 | 1/i/1295:1304 | No text annotation | geometric HL_8CRE_217 HL_81538.2 | |
| HL_9NPY_003 | 1/i/1353:1358 | GNRA | geometric HL_4V9F_015 HL_37824.7 | |
| HL_9NPY_004 | 1/i/1366:1373 | T-loop related | geometric HL_8P9A_218 HL_77436.5 | |
| HL_9NPY_005 | 1/i/1417:1422 | No text annotation | ||
| HL_9NPY_006 | 1/i/1460:1466 | No text annotation | geometric HL_8CRE_221 HL_37369.2 | |
| HL_9NPY_007 | 1/i/1565:1570 | GNRA | geometric HL_3E5C_002 HL_37824.7 | |
| HL_9NPY_008 | 1/i/1614:1625 | No text annotation | geometric HL_8P9A_222 HL_67079.1 | |
| HL_9NPY_009 | 1/i/1658:1666 | No text annotation | geometric HL_8CRE_224 HL_01609.3 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9NPY_001 | 1/i/1214:1217, 1/i/1681:1685 | C-loop | geometric IL_8CRE_445 IL_63596.11 | |
| IL_9NPY_002 | 1/i/1230:1232, 1/i/1526:1528 | Isolated non-canonical cWW pair | geometric IL_8P9A_432 IL_87907.2 | |
| IL_9NPY_003 | 1/i/1235:1236, 1/i/1521:1523 | Minor groove platform | geometric IL_8P9A_433 IL_51454.3 | |
| IL_9NPY_004 | 1/i/1270:1272, 1/i/1510:1512 | Isolated non-canonical cWW pair | geometric IL_5MWI_003 IL_87907.2 | |
| IL_9NPY_005 | 1/i/1281:1287, 1/i/1314:1316 | No text annotation | ||
| IL_9NPY_006 | 1/i/1281:1290, 1/i/1309:1316 | No text annotation | ||
| IL_9NPY_007 | 1/i/1287:1290, 1/i/1309:1314 | No text annotation | ||
| IL_9NPY_008 | 1/i/1291:1293, 1/i/1306:1308 | No text annotation | geometric IL_8P9A_436 IL_14688.1 | |
| IL_9NPY_009 | 1/i/1325:1327, 1/i/1502:1503 | No text annotation | geometric IL_8CRE_451 IL_89505.4 | |
| IL_9NPY_010 | 1/i/1329:1333, 1/i/1498:1500 | No text annotation | geometric IL_8CRE_452 IL_76319.5 | |
| IL_9NPY_011 | 1/i/1329:1335, 1/i/1492:1500 | No text annotation | geometric IL_8P9A_439 IL_86012.1 | |
| IL_9NPY_012 | 1/i/1333:1335, 1/i/1492:1498 | No text annotation | geometric IL_8P9A_440 IL_49061.1 | |
| IL_9NPY_013 | 1/i/1337:1338, 1/i/1488:1490 | Single bulged A | geometric IL_8CRE_455 IL_31462.6 | |
| IL_9NPY_014 | 1/i/1347:1349, 1/i/1380:1382 | Isolated cWH basepair | geometric IL_8P9A_442 IL_10167.6 | |
| IL_9NPY_015 | 1/i/1363:1365, 1/i/1374:1375 | No text annotation | geometric IL_8CRE_457 IL_51454.3 | |
| IL_9NPY_016 | 1/i/1395:1399, 1/i/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_5EW4_002 IL_85033.2 | |
| IL_9NPY_017 | 1/i/1402:1405, 1/i/1441:1444 | No text annotation | geometric IL_8CRE_481 IL_78800.1 | |
| IL_9NPY_018 | 1/i/1408:1409, 1/i/1432:1438 | No text annotation | ||
| IL_9NPY_019 | 1/i/1412:1413, 1/i/1427:1429 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_9NPY_020 | 1/i/1416:1417, 1/i/1422:1424 | Single bulged C | geometric IL_5J7L_311 IL_61258.15 | |
| IL_9NPY_021 | 1/i/1537:1539, 1/i/1594:1596 | Isolated non-canonical cWW pair | geometric IL_8CRE_404 IL_28037.2 | |
| IL_9NPY_022 | 1/i/1541:1550, 1/i/1582:1592 | No text annotation | ||
| IL_9NPY_023 | 1/i/1550:1558, 1/i/1577:1582 | No text annotation | ||
| IL_9NPY_024 | 1/i/1560:1562, 1/i/1573:1575 | Isolated non-canonical cWW pair | geometric IL_5AOX_001 IL_87907.2 | |
| IL_9NPY_025 | 1/i/1604:1610, 1/i/1629:1635 | No text annotation |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9NPY_001 | 1/i/1218:1221, 1/i/1645:1651, 1/i/1673:1680 | No text annotation | geometric J3_8P9A_076 J3_25303.4 | |
| J3_9NPY_002 | 1/i/1225:1228, 1/i/1530:1532, 1/i/1638:1641 | No text annotation | geometric J3_8CRE_079 J3_52655.4 | |
| J3_9NPY_003 | 1/i/1237:1244, 1/i/1255:1266, 1/i/1516:1520 | No text annotation | geometric J3_8CRE_080 J3_83516.4 | |
| J3_9NPY_004 | 1/i/1272:1277, 1/i/1320:1324, 1/i/1504:1510 | No text annotation | geometric J3_8CRE_081 J3_87797.1 | |
| J3_9NPY_005 | 1/i/1340:1345, 1/i/1384:1389, 1/i/1481:1486 | No text annotation | ||
| J3_9NPY_006 | 1/i/1350:1351, 1/i/1360:1363, 1/i/1375:1379 | No text annotation | geometric J3_8CRE_083 J3_76043.3 | |
| J3_9NPY_007 | 1/i/1391:1395, 1/i/1450:1456, 1/i/1470:1479 | No text annotation | ||
| J3_9NPY_008 | 1/i/1532:1536, 1/i/1597:1604, 1/i/1635:1638 | No text annotation | geometric J3_8CRE_086 J3_37047.6 |
Problematic loops
No problematic loops
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