HL_9O2X_023

3D structure

PDB id

9O2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (S)-betahydroxyBocK charged NH-tRNAPyl

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

9O2X|1|A|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9O2X_023 not in the Motif Atlas

Homologous match to HL_6CZR_096

Geometric discrepancy: 0.2057

The information below is about HL_6CZR_096

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9O2X|1|A|G|1089
9O2X|1|A|U|1090
9O2X|1|A|U|1091
9O2X|1|A|A|1092
9O2X|1|A|A|1093
9O2X|1|A|G|1094
9O2X|1|A|U|1095
9O2X|1|A|C|1096

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain G

Small ribosomal subunit protein uS7

Chain U

Small ribosomal subunit protein bS21