HL_9O2X_033
3D structure
- PDB id
- 9O2X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (S)-betahydroxyBocK charged NH-tRNAPyl
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.29 Å
Loop
- Sequence
- GUUCGACGC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9O2X_033 not in the Motif Atlas
- Geometric match to HL_8B0X_032
- Geometric discrepancy: 0.1986
- The information below is about HL_8B0X_032
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.5
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 138
Unit IDs
9O2X|1|Y|G|53
9O2X|1|Y|U|54
9O2X|1|Y|U|55
9O2X|1|Y|C|56
9O2X|1|Y|G|57
9O2X|1|Y|A|58
9O2X|1|Y|C|59
9O2X|1|Y|G|60
9O2X|1|Y|C|61
Current chains
- Chain Y
- A-site tRNAPyl
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- Large ribosomal subunit protein uL16
Coloring options: