HL_9O2X_041

3D structure

PDB id

9O2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (S)-betahydroxyBocK charged NH-tRNAPyl

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9O2X_041 not in the Motif Atlas

Homologous match to HL_8B0X_037

Geometric discrepancy: 0.0817

The information below is about HL_8B0X_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50765.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9O2X|1|a|U|158
9O2X|1|a|G|159
9O2X|1|a|A|160
9O2X|1|a|A|161
9O2X|1|a|U|162
9O2X|1|a|C|163
9O2X|1|a|C|164
9O2X|1|a|A|165
9O2X|1|a|U|166
9O2X|1|a|A|167
9O2X|1|a|G|168

Current chains

Chain a

23S rRNA

Nearby chains

Chain w

50S ribosomal protein L28