HL_9O2X_094

3D structure

PDB id

9O2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (S)-betahydroxyBocK charged NH-tRNAPyl

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

C(OMU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9O2X_094 not in the Motif Atlas

Homologous match to HL_7A0S_061

Geometric discrepancy: 0.1745

The information below is about HL_7A0S_061

Detailed Annotation

LSU A loop

Broad Annotation

LSU A loop

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9O2X|1|a|C|2551
9O2X|1|a|OMU|2552
9O2X|1|a|G|2553
9O2X|1|a|U|2554
9O2X|1|a|U|2555
9O2X|1|a|C|2556
9O2X|1|a|G|2557

Current chains

Chain a

23S rRNA

Nearby chains

Chain Y

A-site tRNAPyl

Chain j

Large ribosomal subunit protein uL14