HL_9O2Y_046

3D structure

PDB id

9O2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (R) beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl

Experimental method

ELECTRON MICROSCOPY

Resolution

2.14 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

9O2Y|1|a|G|329, 9O2Y|1|a|A|330, 9O2Y|1|a|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9O2Y_046 not in the Motif Atlas

Homologous match to HL_7A0S_012

Geometric discrepancy: 0.3706

The information below is about HL_7A0S_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.5

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

9O2Y|1|a|G|327
9O2Y|1|a|U|328
9O2Y|1|a|G|329
9O2Y|1|a|A|330
9O2Y|1|a|C|331
9O2Y|1|a|A|332
9O2Y|1|a|G|333
9O2Y|1|a|C|334
9O2Y|1|a|C|335

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

50S ribosomal protein L24