HL_9O3J_094

3D structure

PDB id

9O3J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

9O3J|1|1a|U|1136, 9O3J|1|1a|C|1137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9O3J_094 not in the Motif Atlas

Geometric match to HL_4LFB_026

Geometric discrepancy: 0.3965

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

9O3J|1|1a|G|1134
9O3J|1|1a|U|1135
9O3J|1|1a|U|1136
9O3J|1|1a|C|1137
9O3J|1|1a|G|1138
9O3J|1|1a|G|1139
9O3J|1|1a|C|1140

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains