HL_9O3J_107

3D structure

PDB id

9O3J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

G(5MU)(PSU)CGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9O3J_107 not in the Motif Atlas

Geometric match to HL_3ADD_004

Geometric discrepancy: 0.1986

The information below is about HL_3ADD_004

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.2

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9O3J|1|1y|G|53
9O3J|1|1y|5MU|54
9O3J|1|1y|PSU|55
9O3J|1|1y|C|56
9O3J|1|1y|G|57
9O3J|1|1y|A|58
9O3J|1|1y|A|59
9O3J|1|1y|U|60
9O3J|1|1y|C|61

Current chains

Chain 1y

E-site Deacylated tRNAlys

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA