3D structure

PDB id
9O3J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
GGUAAUGGC
Length
9 nucleotides
Bulged bases
9O3J|1|2a|G|266
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9O3J_177 not in the Motif Atlas
Geometric match to HL_4LFB_006
Geometric discrepancy: 0.0984
The information below is about HL_4LFB_006
Detailed Annotation
GNRA related
Broad Annotation
GNRA related
Motif group
HL_36455.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

9O3J|1|2a|G|259
9O3J|1|2a|G|260
9O3J|1|2a|U|261
9O3J|1|2a|A|262
9O3J|1|2a|A|263
9O3J|1|2a|U|264
9O3J|1|2a|G|265
9O3J|1|2a|G|266
9O3J|1|2a|C|267

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2q
30S ribosomal protein S17
Chain 2t
30S ribosomal protein S20

Coloring options:


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