HL_9O3K_041

3D structure

PDB id

9O3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMAC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UGAUGAG

Length

7 nucleotides

Bulged bases

9O3K|1|1A|U|1739

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9O3K_041 not in the Motif Atlas

Geometric match to HL_9DFE_041

Geometric discrepancy: 0.2141

The information below is about HL_9DFE_041

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9O3K|1|1A|U|1720
9O3K|1|1A|G|1721
9O3K|1|1A|A|1722
9O3K|1|1A|U|1739
9O3K|1|1A|G|1740
9O3K|1|1A|A|1741
9O3K|1|1A|G|1742

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains