HL_9O3K_139

3D structure

PDB id

9O3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMAC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CAUGGACG

Length

8 nucleotides

Bulged bases

9O3K|1|2A|A|1452, 9O3K|1|2A|U|1453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9O3K_139 not in the Motif Atlas

Geometric match to HL_9DFE_035

Geometric discrepancy: 0.1692

The information below is about HL_9DFE_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9O3K|1|2A|C|1451
9O3K|1|2A|A|1452
9O3K|1|2A|U|1453
9O3K|1|2A|G|1455
9O3K|1|2A|G|1456
9O3K|1|2A|A|1457
9O3K|1|2A|C|1458
9O3K|1|2A|G|1459

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2R

50S ribosomal protein L17