HL_9O3L_188

3D structure

PDB id

9O3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, deacylated A-site tRNAphe, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAphe at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9O3L_188 not in the Motif Atlas

Geometric match to HL_1G1X_005

Geometric discrepancy: 0.1042

The information below is about HL_1G1X_005

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9O3L|1|2a|C|726
9O3L|1|2a|G|727
9O3L|1|2a|A|728
9O3L|1|2a|A|729
9O3L|1|2a|G|730
9O3L|1|2a|G|731

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2o

30S ribosomal protein S15