HL_9O3W_014
3D structure
- PDB id
- 9O3W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- UCUUG(1MA)AAC(A2M)
- Length
- 10 nucleotides
- Bulged bases
- 9O3W|1|L5|C|1325
- QA status
- Modified nucleotides: 1MA, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9O3W_014 not in the Motif Atlas
- Homologous match to HL_8GLP_119
- Geometric discrepancy: 0.0365
- The information below is about HL_8GLP_119
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.7
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
9O3W|1|L5|U|1317
9O3W|1|L5|C|1318
9O3W|1|L5|U|1319
9O3W|1|L5|U|1320
9O3W|1|L5|G|1321
9O3W|1|L5|1MA|1322
9O3W|1|L5|A|1323
9O3W|1|L5|A|1324
9O3W|1|L5|C|1325
9O3W|1|L5|A2M|1326
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain La
- 60S ribosomal protein L27a
- Chain Lb
- Large ribosomal subunit protein eL29
- Chain Le
- Large ribosomal subunit protein eL32
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