HL_9O3W_018

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CCUCUCCAGUCCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3W|1|L5|C|1436
9O3W|1|L5|C|1437
9O3W|1|L5|U|1438
9O3W|1|L5|C|1439
9O3W|1|L5|U|1440
9O3W|1|L5|C|1441
9O3W|1|L5|C|1442
9O3W|1|L5|A|1443
9O3W|1|L5|G|1444
9O3W|1|L5|U|1445
9O3W|1|L5|C|1446
9O3W|1|L5|C|1447
9O3W|1|L5|G|1448

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LF

60S ribosomal protein L7

Chain LQ

Large ribosomal subunit protein eL18

Chain Lb

Large ribosomal subunit protein eL29