HL_9O3W_062

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

9O3W|1|L5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9O3W_062 not in the Motif Atlas

Homologous match to HL_8GLP_067

Geometric discrepancy: 0.0439

The information below is about HL_8GLP_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

9O3W|1|L5|A|4474
9O3W|1|L5|G|4475
9O3W|1|L5|C|4476
9O3W|1|L5|A|4477
9O3W|1|L5|G|4478
9O3W|1|L5|A|4479
9O3W|1|L5|A|4480
9O3W|1|L5|U|4481

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

Large ribosomal subunit protein uL6

Chain Lm

Ubiquitin-ribosomal protein eL40 fusion protein