HL_9O3W_088

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

9O3W|1|S2|C|450, 9O3W|1|S2|G|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3W|1|S2|C|441
9O3W|1|S2|C|442
9O3W|1|S2|U|443
9O3W|1|S2|G|444
9O3W|1|S2|A|445
9O3W|1|S2|G|446
9O3W|1|S2|A|447
9O3W|1|S2|A|448
9O3W|1|S2|A|449
9O3W|1|S2|C|450
9O3W|1|S2|G|451
9O3W|1|S2|G|452

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SG

Small ribosomal subunit protein eS6

Chain SI

Small ribosomal subunit protein eS8

Chain SY

40S ribosomal protein S24