HL_9O3Y_054

3D structure

PDB id

9O3Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-002 stalled on FPAK-containing nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

9O3Y|1|L5|G|4195

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9O3Y_054 not in the Motif Atlas

Homologous match to HL_8GLP_059

Geometric discrepancy: 0.0467

The information below is about HL_8GLP_059

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

9O3Y|1|L5|C|4193
9O3Y|1|L5|U|4194
9O3Y|1|L5|G|4195
9O3Y|1|L5|OMG|4196
9O3Y|1|L5|G|4197
9O3Y|1|L5|G|4198
9O3Y|1|L5|C|4199
9O3Y|1|L5|G|4200
9O3Y|1|L5|G|4201

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Large ribosomal subunit protein uL16

Chain Lb

Large ribosomal subunit protein eL29

Chain Pt

Transfer RNA; tRNA