HL_9OFV_013

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OFV_013 not in the Motif Atlas

Geometric match to HL_5FJC_003

Geometric discrepancy: 0.101

The information below is about HL_5FJC_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9OFV|1|f|C|599
9OFV|1|f|G|600
9OFV|1|f|U|601
9OFV|1|f|A|602
9OFV|1|f|A|603
9OFV|1|f|G|604

Current chains

Chain f

25S rRNA

Nearby chains

Chain l

Large ribosomal subunit protein uL4A

Chain o

60S ribosomal protein L7-A