9OFV Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9OFV_001 | 1/f/38:45 | No text annotation | geometric HL_8CRE_001 NA | |
| HL_9OFV_002 | 1/f/69:74 | No text annotation | geometric HL_8CRE_002 NA | |
| HL_9OFV_003 | 1/f/90:96 | No text annotation | geometric HL_9DFE_007 HL_76371.2 | |
| HL_9OFV_004 | 1/f/132:136 | No text annotation | geometric HL_8CRE_004 NA | |
| HL_9OFV_005 | 1/f/194:201 | T-loop with 1 bulged base | geometric HL_8P9A_117 HL_13999.3 | |
| HL_9OFV_006 | 1/f/208:212 | No text annotation | geometric HL_8CRE_006 NA | |
| HL_9OFV_007 | 1/f/216:224 | T-loop with unstacked turn | geometric HL_8CRE_007 NA | |
| HL_9OFV_008 | 1/f/278:287 | T-loop related | geometric HL_8P9A_120 HL_63894.2 | |
| HL_9OFV_009 | 1/f/303:312 | No text annotation | geometric HL_8CRE_009 NA | |
| HL_9OFV_010 | 1/f/357:362 | GNRA | geometric HL_8CRE_010 NA | |
| HL_9OFV_011 | 1/f/382:387 | GNRA | geometric HL_8CRE_011 NA | |
| HL_9OFV_013 | 1/f/599:604 | GNRA | geometric HL_5FJC_003 HL_34789.4 | |
| HL_9OFV_014 | 1/f/640:649 | T-loop with 2 stacked bulged bases | geometric HL_8CRE_013 NA | |
| HL_9OFV_015 | 1/f/686:694 | No text annotation | geometric HL_8CRE_014 NA | |
| HL_9OFV_016 | 1/f/707:712 | GNRA | geometric HL_8CRE_015 NA | |
| HL_9OFV_017 | 1/f/732:737 | GNRA | geometric HL_8Z8U_001 HL_34789.4 | |
| HL_9OFV_018 | 1/f/763:768 | No text annotation | geometric HL_8CRE_017 NA | |
| HL_9OFV_020 | 1/f/876:885 | No text annotation | geometric HL_8CRE_019 NA | |
| HL_9OFV_021 | 1/f/910:918 | No text annotation | geometric HL_8P9A_133 HL_92598.1 | |
| HL_9OFV_022 | 1/f/958:963 | No text annotation | geometric HL_4V9F_026 HL_27530.1 | |
| HL_9OFV_024 | 1/f/1076:1083 | T-loop related | geometric HL_8CRE_023 NA | |
| HL_9OFV_025 | 1/f/1126:1132 | GNRA | geometric HL_8CRE_024 NA | |
| HL_9OFV_026 | 1/f/1148:1155 | No text annotation | geometric HL_8P9A_138 HL_47171.1 | |
| HL_9OFV_028 | 1/f/1267:1274 | GNRA wlth tandem sheared | geometric HL_8P9A_140 HL_98423.3 | |
| HL_9OFV_029 | 1/f/1347:1357 | No text annotation | ||
| HL_9OFV_030 | 1/f/1403:1408 | GNRA | geometric HL_8CRE_029 NA | |
| HL_9OFV_031 | 1/f/1462:1470 | T-loop with 2 stacked bulged bases | geometric HL_8CRE_030 NA | |
| HL_9OFV_032 | 1/f/1506:1512 | Pseudoknot geometry with 3' bulge | geometric HL_8CRE_031 NA | |
| HL_9OFV_033 | 1/f/1544:1549 | GNRA variation | geometric HL_8CRE_032 NA | |
| HL_9OFV_035 | 1/f/1599:1608 | No text annotation | geometric HL_8CRE_034 NA | |
| HL_9OFV_036 | 1/f/1634:1639 | GNRA | geometric HL_8CRE_035 NA | |
| HL_9OFV_037 | 1/f/1680:1688 | Pseudoknot geometry | geometric HL_8CRE_036 NA | |
| HL_9OFV_038 | 1/f/1719:1725 | No text annotation | geometric HL_8P9A_149 HL_97067.1 | |
| HL_9OFV_040 | 1/f/1792:1796 | Mini UNCG | geometric HL_8P9A_151 HL_90436.3 | |
| HL_9OFV_041 | 1/f/1844:1851 | No text annotation | geometric HL_8CRE_040 NA | |
| HL_9OFV_042 | 1/f/1862:1868 | GNRA | geometric HL_8P9A_153 HL_34789.4 | |
| HL_9OFV_043 | 1/f/1923:1928 | UNCG | geometric HL_8P9A_154 HL_61337.3 | |
| HL_9OFV_044 | 1/f/2110:2114 | No text annotation | ||
| HL_9OFV_045 | 1/f/2135:2145 | No text annotation | geometric HL_8P9A_157 HL_87681.1 | |
| HL_9OFV_046 | 1/f/2164:2170 | GNRA | geometric HL_8CRE_045 NA | |
| HL_9OFV_047 | 1/f/2220:2225 | GNRA | geometric HL_8P9A_159 HL_34789.4 | |
| HL_9OFV_048 | 1/f/2292:2300 | No text annotation | geometric HL_8CRE_048 NA | |
| HL_9OFV_049 | 1/f/2369:2378 | No text annotation | geometric HL_8P9A_162 HL_78372.1 | |
| HL_9OFV_052 | 1/f/2568:2573 | No text annotation | ||
| HL_9OFV_053 | 1/f/2616:2624 | No text annotation | geometric HL_8P9A_165 HL_11974.2 | |
| HL_9OFV_054 | 1/f/2633:2645 | No text annotation | geometric HL_8P9A_166 HL_02042.1 | |
| HL_9OFV_055 | 1/f/2673:2681 | No text annotation | geometric HL_8CRE_055 NA | |
| HL_9OFV_056 | 1/f/2693:2700 | Pseudoknot geometry | geometric HL_8CRE_056 NA | |
| HL_9OFV_057 | 1/f/2724:2732 | No text annotation | geometric HL_8CRE_057 NA | |
| HL_9OFV_058 | 1/f/2744:2749 | GNRA | geometric HL_8CRE_058 NA | |
| HL_9OFV_059 | 1/f/2776:2784 | Pseudoknot geometry | geometric HL_8CRE_059 NA | |
| HL_9OFV_060 | 1/f/2840:2848 | No text annotation | geometric HL_8P9A_172 HL_52011.1 | |
| HL_9OFV_061 | 1/f/2897:2904 | GNRA variation | geometric HL_8P9A_173 HL_46665.2 | |
| HL_9OFV_062 | 1/f/2920:2926 | No text annotation | geometric HL_8CRE_062 NA | |
| HL_9OFV_063 | 1/f/2963:2968 | GNRA | geometric HL_8P9A_175 HL_34789.4 | |
| HL_9OFV_064 | 1/f/3025:3030 | GNRA | geometric HL_6TFF_001 HL_34789.4 | |
| HL_9OFV_065 | 1/f/3068:3073 | No text annotation | geometric HL_8P9A_177 HL_12125.2 | |
| HL_9OFV_066 | 1/f/3110:3124 | No text annotation | geometric HL_8CRE_066 NA | |
| HL_9OFV_067 | 1/f/3194:3197 | No text annotation | geometric HL_8CRE_004 NA | |
| HL_9OFV_068 | 1/f/3240:3247 | No text annotation | geometric HL_8CRE_068 NA | |
| HL_9OFV_069 | 1/f/3303:3311 | No text annotation | geometric HL_8CRE_069 NA | |
| HL_9OFV_071 | 1/h/32:45 | No text annotation | geometric HL_8OI5_068 HL_01182.1 | |
| HL_9OFV_072 | 1/h/36:41 | No text annotation | geometric HL_8OI5_069 HL_59381.2 | |
| HL_9OFV_073 | 1/h/88:93 | GNRA | geometric HL_8OI5_070 HL_34789.4 | |
| HL_9OFV_074 | 1/i/47:56 | No text annotation | geometric HL_8P9A_186 HL_17803.1 | |
| HL_9OFV_075 | 1/i/69:89 | No text annotation | geometric HL_8P9A_187 HL_68571.1 | |
| HL_9OFV_076 | 1/i/108:114 | No text annotation | geometric HL_8CRE_076 NA | |
| HL_9OFV_077 | 1/i/124:129 | No text annotation | geometric HL_8CRE_077 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9OFV_012 | No text annotation | ||
| HL_9OFV_019 | GNRA | ||
| HL_9OFV_023 | GNRA | ||
| HL_9OFV_027 | No text annotation | ||
| HL_9OFV_034 | No text annotation | ||
| HL_9OFV_039 | No text annotation | ||
| HL_9OFV_050 | No text annotation | ||
| HL_9OFV_051 | No text annotation | ||
| HL_9OFV_070 | No text annotation | ||
| HL_9OFV_078 | No text annotation | ||
| HL_9OFV_079 | T-loop with 2 stacked bulged bases | ||
| HL_9OFV_080 | No text annotation | ||
| HL_9OFV_081 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9OFV_001 | 1/f/7:8, 1/i/150:152 | No text annotation | geometric IL_8CRE_002 NA | |
| IL_9OFV_002 | 1/f/13:15, 1/i/144:145 | No text annotation | geometric IL_8CRE_003 NA | |
| IL_9OFV_003 | 1/f/27:28, 1/f/56:58 | Single stack bend | geometric IL_8CRE_004 NA | |
| IL_9OFV_004 | 1/f/31:38, 1/f/45:53 | tSH-tHW-tHH-tHS | geometric IL_8CRE_005 NA | |
| IL_9OFV_005 | 1/f/82:89, 1/f/97:103 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_8P9A_235 IL_53348.1 | |
| IL_9OFV_006 | 1/f/123:124, 1/f/144:149 | No text annotation | geometric IL_8CRE_007 NA | |
| IL_9OFV_007 | 1/f/125:127, 1/f/141:143 | Isolated non-canonical cWW pair | geometric IL_8CRE_008 NA | |
| IL_9OFV_008 | 1/f/163:165, 1/f/257:258 | Single stack bend | geometric IL_8P9A_238 IL_15011.2 | |
| IL_9OFV_009 | 1/f/169:170, 1/f/248:253 | No text annotation | ||
| IL_9OFV_011 | 1/f/189:191, 1/f/204:205 | No text annotation | geometric IL_8CRE_013 NA | |
| IL_9OFV_012 | 1/f/337:339, 1/i/25:26 | Single bulged A | geometric IL_8CRE_014 NA | |
| IL_9OFV_013 | 1/f/376:379, 1/f/390:403 | No text annotation | geometric IL_8CRE_015 NA | |
| IL_9OFV_014 | 1/f/404:410, 1/i/13:19 | No text annotation | geometric IL_8P9A_244 IL_22311.1 | |
| IL_9OFV_015 | 1/f/429:431, 1/f/628:630 | Isolated non-canonical cWW pair | geometric IL_8P9A_245 IL_71625.3 | |
| IL_9OFV_016 | 1/f/512:513, 1/f/577:579 | Single bulged A | geometric IL_8P9A_246 IL_14190.2 | |
| IL_9OFV_017 | 1/f/517:525, 1/f/567:573 | No text annotation | geometric IL_8P9A_247 IL_06606.1 | |
| IL_9OFV_018 | 1/f/531:538, 1/f/553:561 | No text annotation | geometric IL_8P9A_248 IL_25001.1 | |
| IL_9OFV_019 | 1/f/668:670, 1/f/792:794 | Isolated non-canonical cWW pair | geometric IL_8P9A_249 IL_01003.3 | |
| IL_9OFV_020 | 1/f/680:684, 1/f/696:700 | No text annotation | geometric IL_8P9A_250 IL_87030.1 | |
| IL_9OFV_021 | 1/f/725:728, 1/f/741:745 | UAA/GAN variation | geometric IL_8P9A_251 IL_45790.2 | |
| IL_9OFV_022 | 1/f/752:753, 1/f/779:781 | Single bulged A | geometric IL_8P9A_252 IL_14190.2 | |
| IL_9OFV_023 | 1/f/755:756, 1/f/775:777 | No text annotation | geometric IL_8CRE_027 NA | |
| IL_9OFV_024 | 1/f/758:763, 1/f/768:773 | No text annotation | geometric IL_8P9A_254 IL_57885.2 | |
| IL_9OFV_025 | 1/f/803:805, 1/f/938:940 | Isolated non-canonical cWW pair | geometric IL_8P9A_255 IL_01003.3 | |
| IL_9OFV_026 | 1/f/805:809, 1/f/931:938 | No text annotation | geometric IL_8P9A_256 IL_73855.1 | |
| IL_9OFV_027 | 1/f/833:834, 1/f/859:861 | No text annotation | geometric IL_8CRE_032 NA | |
| IL_9OFV_028 | 1/f/834:838, 1/f/855:859 | Triple sheared | geometric IL_8CRE_033 NA | |
| IL_9OFV_029 | 1/f/869:872, 1/f/888:890 | No text annotation | geometric IL_8CRE_034 NA | |
| IL_9OFV_030 | 1/f/873:875, 1/f/886:887 | Single bulged U | geometric IL_8P9A_260 IL_97561.3 | |
| IL_9OFV_031 | 1/f/907:909, 1/f/919:923 | No text annotation | geometric IL_8CRE_036 NA | |
| IL_9OFV_032 | 1/f/954:956, 1/f/965:967 | Isolated non-canonical cWW pair | geometric IL_8CRE_037 NA | |
| IL_9OFV_033 | 1/f/969:970, 1/f/1111:1113 | Single stack bend | geometric IL_8CRE_038 NA | |
| IL_9OFV_034 | 1/f/977:982, 1/f/1101:1104 | No text annotation | ||
| IL_9OFV_035 | 1/f/983:985, 1/f/1099:1100 | No text annotation | geometric IL_8CRE_040 NA | |
| IL_9OFV_036 | 1/f/991:997, 1/f/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_8P9A_266 IL_94128.1 | |
| IL_9OFV_037 | 1/f/997:998, 1/f/1050:1052 | Minor groove platform | geometric IL_8CRE_042 NA | |
| IL_9OFV_038 | 1/f/999:1004, 1/f/1046:1049 | C-loop with bulged stacked A's | geometric IL_8CRE_043 NA | |
| IL_9OFV_039 | 1/f/1006:1009, 1/f/1041:1044 | Tandem non-canonical cWW pairs | geometric IL_8P9A_269 IL_71194.2 | |
| IL_9OFV_040 | 1/f/1009:1011, 1/f/1039:1041 | Isolated non-canonical cWW pair | geometric IL_8P9A_270 IL_01003.3 | |
| IL_9OFV_042 | 1/f/1069:1071, 1/f/1087:1089 | Isolated non-canonical cWW pair | geometric IL_8CRE_047 NA | |
| IL_9OFV_043 | 1/f/1074:1076, 1/f/1083:1084 | Single bulged A | geometric IL_8P9A_273 IL_14190.2 | |
| IL_9OFV_044 | 1/f/1120:1122, 1/f/1136:1138 | Isolated non-canonical cWW pair | geometric IL_8CRE_049 NA | |
| IL_9OFV_046 | 1/f/1167:1171, 1/f/1328:1332 | UAA/GAN | geometric IL_8CRE_051 NA | |
| IL_9OFV_047 | 1/f/1173:1180, 1/f/1325:1326 | SSU/LSU pseudoknot | geometric IL_8P9A_277 IL_07396.1 | |
| IL_9OFV_048 | 1/f/1180:1182, 1/f/1324:1325 | Single bulged U | geometric IL_8P9A_278 IL_97561.3 | |
| IL_9OFV_049 | 1/f/1187:1194, 1/f/1314:1319 | No text annotation | geometric IL_8CRE_054 NA | |
| IL_9OFV_050 | 1/f/1194:1205, 1/f/1299:1314 | No text annotation | geometric IL_8P9A_280 IL_34501.1 | |
| IL_9OFV_051 | 1/f/1207:1209, 1/f/1296:1297 | No text annotation | geometric IL_8CRE_056 NA | |
| IL_9OFV_052 | 1/f/1218:1226, 1/f/1283:1287 | Kink-turn | geometric IL_4V9F_042 IL_99692.3 | |
| IL_9OFV_054 | 1/f/1262:1266, 1/f/1275:1277 | Major groove platform with extra cWW | geometric IL_5D8H_003 IL_36931.2 | |
| IL_9OFV_055 | 1/f/1376:1378, 1/f/1428:1431 | No text annotation | geometric IL_8CRE_061 NA | |
| IL_9OFV_056 | 1/f/1385:1387, 1/f/1420:1421 | Single bulged A | geometric IL_8P9A_286 IL_14190.2 | |
| IL_9OFV_057 | 1/f/1388:1395, 1/f/1415:1419 | Kink-turn | geometric IL_8CRE_063 NA | |
| IL_9OFV_058 | 1/f/1398:1400, 1/f/1411:1412 | Single bulged A | geometric IL_8P9A_288 IL_14190.2 | |
| IL_9OFV_059 | 1/f/1444:1450, 1/f/2354:2359 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_8CRE_065 NA | |
| IL_9OFV_060 | 1/f/1501:1505, 1/f/1513:1515 | C-loop | geometric IL_8P9A_290 IL_63596.12 | |
| IL_9OFV_061 | 1/f/1532:1536, 1/f/1585:1590 | UAA/GAN | geometric IL_8CRE_067 NA | |
| IL_9OFV_062 | 1/f/1618:1621, 1/f/1824:1826 | No text annotation | geometric IL_8CRE_069 NA | |
| IL_9OFV_063 | 1/f/1623:1624, 1/f/1819:1822 | Major groove platform related | geometric IL_8P9A_293 IL_48076.8 | |
| IL_9OFV_064 | 1/f/1627:1631, 1/f/1811:1816 | No text annotation | geometric IL_8CRE_071 NA | |
| IL_9OFV_065 | 1/f/1645:1649, 1/f/1806:1810 | Triple sheared | geometric IL_8CRE_072 NA | |
| IL_9OFV_066 | 1/f/1661:1663, 1/f/1786:1788 | Isolated non-canonical cWW pair | geometric IL_8CRE_073 NA | |
| IL_9OFV_067 | 1/f/1669:1670, 1/f/1778:1780 | No text annotation | geometric IL_8CRE_074 NA | |
| IL_9OFV_068 | 1/f/1670:1671, 1/f/1776:1778 | Single stack bend | geometric IL_8CRE_075 NA | |
| IL_9OFV_069 | 1/f/1694:1698, 1/f/1747:1752 | No text annotation | geometric IL_8P9A_299 IL_25943.1 | |
| IL_9OFV_070 | 1/f/1702:1707, 1/f/1737:1743 | No text annotation | geometric IL_8P9A_300 IL_00680.1 | |
| IL_9OFV_071 | 1/f/1711:1717, 1/f/1727:1733 | No text annotation | geometric IL_8P9A_301 IL_93476.1 | |
| IL_9OFV_072 | 1/f/1883:1889, 1/f/2346:2349 | No text annotation | geometric IL_8CRE_079 NA | |
| IL_9OFV_073 | 1/f/1895:1897, 1/f/2338:2340 | No text annotation | geometric IL_8P9A_303 IL_10432.1 | |
| IL_9OFV_074 | 1/f/1898:1901, 1/f/2336:2337 | Major groove platform; stack outside cWW | geometric IL_8P9A_304 IL_74641.2 | |
| IL_9OFV_075 | 1/f/1898:1906, 1/f/2333:2337 | No text annotation | geometric IL_8P9A_305 IL_80252.1 | |
| IL_9OFV_076 | 1/f/1901:1906, 1/f/2333:2336 | No text annotation | geometric IL_8P9A_306 IL_28217.1 | |
| IL_9OFV_077 | 1/f/1918:1923, 1/f/1928:1934 | No text annotation | geometric IL_8CRE_084 NA | |
| IL_9OFV_078 | 1/f/1940:1942, 1/f/2106:2108 | Isolated non-canonical cWW pair | geometric IL_8CRE_085 NA | |
| IL_9OFV_079 | 1/f/1947:1948, 1/f/2098:2101 | No text annotation | geometric IL_8P9A_309 IL_18824.1 | |
| IL_9OFV_080 | 1/f/2128:2129, 1/f/2323:2325 | Single bulged A | geometric IL_8CRE_087 NA | |
| IL_9OFV_081 | 1/f/2156:2161, 1/f/2173:2180 | No text annotation | geometric IL_8P9A_311 IL_14684.1 | |
| IL_9OFV_082 | 1/f/2196:2199, 1/f/2245:2246 | Minor groove platform, major groove intercalation | geometric IL_8P9A_312 IL_55206.1 | |
| IL_9OFV_083 | 1/f/2200:2201, 1/f/2241:2244 | No text annotation | geometric IL_8CRE_090 NA | |
| IL_9OFV_084 | 1/f/2204:2206, 1/f/2237:2238 | Single bulged U | geometric IL_8TQX_001 IL_97561.3 | |
| IL_9OFV_085 | 1/f/2206:2210, 1/f/2235:2237 | Other IL | geometric IL_4PDB_001 IL_70784.1 | |
| IL_9OFV_086 | 1/f/2211:2217, 1/f/2228:2234 | No text annotation | geometric IL_8CRE_093 NA | |
| IL_9OFV_087 | 1/f/2276:2277, 1/f/2307:2310 | No text annotation | geometric IL_8CRE_094 NA | |
| IL_9OFV_088 | 1/f/2277:2288, 1/f/2304:2307 | No text annotation | geometric IL_8CRE_095 NA | |
| IL_9OFV_089 | 1/f/2391:2394, 1/f/2986:2988 | No text annotation | geometric IL_8P9A_319 IL_75527.2 | |
| IL_9OFV_090 | 1/f/2396:2398, 1/f/2981:2984 | No text annotation | geometric IL_8CRE_097 NA | |
| IL_9OFV_091 | 1/f/2409:2411, 1/f/2811:2812 | No text annotation | geometric IL_8CRE_098 NA | |
| IL_9OFV_092 | 1/f/2412:2413, 1/f/2807:2810 | Minor groove platform | geometric IL_8P9A_322 IL_34520.3 | |
| IL_9OFV_093 | 1/f/2423:2425, 1/f/2604:2607 | No text annotation | geometric IL_8CRE_100 NA | |
| IL_9OFV_097 | 1/f/2520:2526, 1/f/2584:2587 | No text annotation | geometric IL_8P9A_324 IL_52092.1 | |
| IL_9OFV_098 | 1/f/2614:2615, 1/f/2625:2627 | Single bulged A | geometric IL_8P9A_325 IL_14190.2 | |
| IL_9OFV_099 | 1/f/2666:2668, 1/f/2686:2690 | No text annotation | geometric IL_8P9A_326 IL_14250.1 | |
| IL_9OFV_100 | 1/f/2718:2721, 1/f/2735:2738 | Tandem non-canonical cWW pairs | geometric IL_8P9A_327 IL_15225.2 | |
| IL_9OFV_101 | 1/f/2770:2773, 1/f/2787:2788 | No text annotation | geometric IL_8CRE_110 NA | |
| IL_9OFV_102 | 1/f/2823:2826, 1/f/2863:2867 | No text annotation | geometric IL_8CRE_111 NA | |
| IL_9OFV_103 | 1/f/2826:2828, 1/f/2862:2863 | No text annotation | geometric IL_8P9A_331 IL_46637.2 | |
| IL_9OFV_104 | 1/f/2828:2830, 1/f/2858:2862 | No text annotation | geometric IL_8P9A_332 IL_36931.2 | |
| IL_9OFV_105 | 1/f/2835:2839, 1/f/2849:2853 | Double sheared with non-canonical cWW | geometric IL_8CRE_114 NA | |
| IL_9OFV_106 | 1/f/2876:2877, 1/f/2949:2951 | No text annotation | geometric IL_8CRE_115 NA | |
| IL_9OFV_107 | 1/f/2879:2881, 1/f/2943:2947 | Isolated non-canonical cWW with bulges | geometric IL_8CRE_116 NA | |
| IL_9OFV_108 | 1/f/2881:2882, 1/f/2940:2943 | No text annotation | geometric IL_8CRE_117 NA | |
| IL_9OFV_109 | 1/f/2889:2891, 1/f/2912:2914 | Isolated non-canonical cWW pair | geometric IL_8P9A_337 IL_01003.3 | |
| IL_9OFV_110 | 1/f/2889:2892, 1/f/2909:2914 | No text annotation | geometric IL_8P9A_338 IL_07469.3 | |
| IL_9OFV_111 | 1/f/2891:2892, 1/f/2909:2912 | No text annotation | geometric IL_8CRE_120 NA | |
| IL_9OFV_112 | 1/f/2918:2920, 1/f/2926:2928 | Isolated non-canonical cWW pair | geometric IL_8CRE_121 NA | |
| IL_9OFV_113 | 1/f/2960:2961, 1/f/2970:2972 | Single bulged A | geometric IL_1U9S_001 IL_14190.2 | |
| IL_9OFV_114 | 1/f/3004:3007, 1/f/3139:3144 | Double sheared | geometric IL_8P9A_342 IL_58355.2 | |
| IL_9OFV_115 | 1/f/3012:3014, 1/f/3040:3042 | Isolated non-canonical cWW pair | geometric IL_8P9A_343 IL_71625.3 | |
| IL_9OFV_116 | 1/f/3018:3025, 1/f/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_8P9A_344 IL_62167.3 | |
| IL_9OFV_117 | 1/f/3047:3051, 1/f/3091:3094 | No text annotation | geometric IL_8P9A_345 IL_06671.1 | |
| IL_9OFV_118 | 1/f/3054:3059, 1/f/3084:3088 | No text annotation | geometric IL_8P9A_346 IL_98200.1 | |
| IL_9OFV_119 | 1/f/3063:3064, 1/f/3077:3080 | No text annotation | geometric IL_8CRE_128 NA | |
| IL_9OFV_120 | 1/f/3103:3107, 1/f/3127:3131 | UAA/GAN | geometric IL_8P9A_348 IL_08938.1 | |
| IL_9OFV_121 | 1/f/3164:3166, 1/f/3284:3286 | Isolated non-canonical cWW pair | geometric IL_4V9F_105 IL_01003.3 | |
| IL_9OFV_122 | 1/f/3168:3170, 1/f/3280:3282 | Isolated non-canonical cWW pair | geometric IL_2OE5_001 IL_71625.3 | |
| IL_9OFV_123 | 1/f/3177:3179, 1/f/3210:3211 | Single bulged A | geometric IL_8P9A_351 IL_14190.2 | |
| IL_9OFV_124 | 1/f/3179:3188, 1/f/3204:3210 | No text annotation | ||
| IL_9OFV_125 | 1/f/3193:3194, 1/f/3197:3199 | Single bulged U | geometric IL_5J7L_298 NA | |
| IL_9OFV_126 | 1/f/3225:3229, 1/f/3258:3260 | No text annotation | geometric IL_8CRE_133 NA | |
| IL_9OFV_127 | 1/f/3233:3235, 1/f/3252:3254 | Isolated non-canonical cWW pair | geometric IL_8P9A_270 IL_01003.3 | |
| IL_9OFV_128 | 1/f/3235:3238, 1/f/3249:3252 | Tandem non-canonical cWW pairs | geometric IL_8P9A_355 IL_71194.2 | |
| IL_9OFV_129 | 1/f/3300:3303, 1/f/3311:3314 | Tandem non-canonical cWW pairs | geometric IL_8CRE_135 NA | |
| IL_9OFV_130 | 1/f/3318:3320, 1/f/3387:3388 | No text annotation | geometric IL_8CRE_136 NA | |
| IL_9OFV_131 | 1/f/3324:3325, 1/f/3381:3383 | Single bulged U | geometric IL_7KKV_001 IL_97561.3 | |
| IL_9OFV_132 | 1/f/3328:3330, 1/f/3373:3378 | No text annotation | geometric IL_8CRE_138 NA | |
| IL_9OFV_133 | 1/f/3332:3337, 1/f/3367:3371 | No text annotation | geometric IL_8CRE_139 NA | |
| IL_9OFV_134 | 1/f/3340:3342, 1/f/3363:3364 | No text annotation | geometric IL_8CRE_140 NA | |
| IL_9OFV_135 | 1/f/3342:3345, 1/f/3360:3363 | Double sheared | geometric IL_8CRE_141 NA | |
| IL_9OFV_137 | 1/h/15:16, 1/h/63:65 | Single bulged A | geometric IL_8P9A_364 IL_14190.2 | |
| IL_9OFV_138 | 1/h/21:27, 1/h/53:58 | No text annotation | geometric IL_8OI5_135 IL_41504.1 | |
| IL_9OFV_139 | 1/h/28:29, 1/h/49:52 | No text annotation | geometric IL_8OI5_136 IL_87975.1 | |
| IL_9OFV_140 | 1/h/29:30, 1/h/47:49 | Single stack bend | geometric IL_8OI5_137 IL_15011.2 | |
| IL_9OFV_141 | 1/h/32:36, 1/h/41:45 | No text annotation | geometric IL_8OI5_138 IL_58103.12 | |
| IL_9OFV_142 | 1/h/72:80, 1/h/100:106 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_8P9A_369 IL_62167.3 | |
| IL_9OFV_143 | 1/h/84:87, 1/h/94:96 | Isolated non-canonical cWW pair | geometric IL_8OI5_140 IL_01003.3 | |
| IL_9OFV_144 | 1/i/64:66, 1/i/93:96 | Isolated non-canonical cWW pair | geometric IL_8CRE_150 NA | |
| IL_9OFV_145 | 1/i/68:69, 1/i/89:91 | Single bulged U | geometric IL_8P9A_372 IL_97561.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9OFV_010 | No text annotation | ||
| IL_9OFV_041 | No text annotation | ||
| IL_9OFV_045 | No text annotation | ||
| IL_9OFV_053 | No text annotation | ||
| IL_9OFV_094 | Single bulged A | ||
| IL_9OFV_095 | No text annotation | ||
| IL_9OFV_096 | No text annotation | ||
| IL_9OFV_136 | No text annotation | ||
| IL_9OFV_146 | Isolated non-canonical cWW pair | ||
| IL_9OFV_147 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9OFV_001 | 1/f/113:123, 1/f/149:158, 1/f/263:267 | No text annotation | geometric J3_8CRE_001 NA | |
| J3_9OFV_002 | 1/f/113:124, 1/f/144:158, 1/f/263:267 | No text annotation | ||
| J3_9OFV_003 | 1/f/185:189, 1/f/205:214, 1/f/226:231 | No text annotation | geometric J3_8P9A_044 J3_97456.1 | |
| J3_9OFV_004 | 1/f/340:356, 1/f/363:368, 1/i/21:24 | No text annotation | geometric J3_8P9A_045 J3_07616.1 | |
| J3_9OFV_005 | 1/f/369:376, 1/f/403:404, 1/i/19:20 | No text annotation | geometric J3_8P9A_046 J3_68715.1 | |
| J3_9OFV_006 | 1/f/369:379, 1/f/390:404, 1/i/19:20 | No text annotation | geometric J3_8CRE_006 NA | |
| J3_9OFV_007 | 1/f/502:503, 1/f/588:597, 1/f/606:611 | No text annotation | geometric J3_8P9A_048 J3_86133.1 | |
| J3_9OFV_008 | 1/f/814:820, 1/f/905:907, 1/f/923:926 | No text annotation | geometric J3_8P9A_049 J3_46658.1 | |
| J3_9OFV_009 | 1/f/828:831, 1/f/863:867, 1/f/892:897 | No text annotation | geometric J3_8P9A_050 J3_21998.1 | |
| J3_9OFV_010 | 1/f/986:987, 1/f/1062:1066, 1/f/1092:1098 | No text annotation | geometric J3_8CRE_011 NA | |
| J3_9OFV_012 | 1/f/1479:1485, 1/f/1857:1859, 1/f/1871:1874 | No text annotation | geometric J3_8CRE_013 NA | |
| J3_9OFV_013 | 1/f/1488:1491, 1/f/1837:1843, 1/f/1852:1854 | No text annotation | geometric J3_8P9A_054 J3_76012.1 | |
| J3_9OFV_014 | 1/f/1526:1531, 1/f/1591:1595, 1/f/1612:1613 | No text annotation | geometric J3_8P9A_055 J3_94309.1 | |
| J3_9OFV_015 | 1/f/1537:1542, 1/f/1551:1560, 1/f/1579:1584 | No text annotation | ||
| J3_9OFV_016 | 1/f/1631:1632, 1/f/1641:1645, 1/f/1810:1811 | No text annotation | geometric J3_8P9A_087 J3_05348.1 | |
| J3_9OFV_017 | 1/f/1654:1658, 1/f/1791:1792, 1/f/1796:1801 | No text annotation | geometric J3_8P9A_058 J3_08594.1 | |
| J3_9OFV_018 | 1/f/2432:2435, 1/f/2512:2517, 1/f/2590:2597 | No text annotation | geometric J3_8CRE_019 NA | |
| J3_9OFV_019 | 1/f/2529:2532, 1/f/2547:2563, 1/f/2578:2581 | No text annotation | geometric J3_8CRE_020 NA | |
| J3_9OFV_020 | 1/f/2651:2653, 1/f/2754:2765, 1/f/2793:2798 | No text annotation | geometric J3_8CRE_021 NA | |
| J3_9OFV_021 | 1/f/2664:2666, 1/f/2690:2692, 1/f/2701:2706 | No text annotation | geometric J3_8P9A_062 J3_05327.1 | |
| J3_9OFV_022 | 1/f/2886:2889, 1/f/2914:2916, 1/f/2930:2936 | No text annotation | geometric J3_8CRE_023 NA | |
| J3_9OFV_023 | 1/f/3171:3176, 1/f/3212:3220, 1/f/3265:3279 | No text annotation | ||
| J3_9OFV_024 | 1/f/3298:3300, 1/f/3314:3318, 1/f/3388:3390 | No text annotation | geometric J3_8P9A_065 J3_81015.1 | |
| J3_9OFV_025 | 1/h/9:14, 1/h/66:67, 1/h/111:112 | No text annotation | geometric J3_8OI5_025 J3_26985.1 | |
| J3_9OFV_026 | 1/i/44:45, 1/i/58:64, 1/i/96:100 | No text annotation | geometric J3_8P9A_067 J3_01004.1 | |
| J4_9OFV_001 | 1/f/112:113, 1/f/267:272, 1/f/293:299, 1/f/316:319 | No text annotation | ||
| J4_9OFV_002 | 1/f/185:189, 1/f/205:208, 1/f/212:214, 1/f/226:231 | No text annotation | ||
| J4_9OFV_003 | 1/f/1451:1457, 1/f/1475:1476, 1/f/1877:1880, 1/f/2352:2353 | No text annotation | ||
| J4_9OFV_004 | 1/f/1492:1496, 1/f/1520:1525, 1/f/1614:1615, 1/f/1829:1836 | No text annotation | ||
| J4_9OFV_005 | 1/f/1674:1675, 1/f/1693:1694, 1/f/1752:1753, 1/f/1772:1773 | No text annotation | ||
| J4_9OFV_006 | 1/f/2130:2134, 1/f/2146:2150, 1/f/2186:2190, 1/f/2317:2322 | No text annotation | ||
| J4_9OFV_007 | 1/f/2192:2194, 1/f/2248:2249, 1/f/2267:2276, 1/f/2310:2315 | No text annotation | ||
| J4_9OFV_008 | 1/f/2654:2658, 1/f/2712:2716, 1/f/2740:2742, 1/f/2751:2753 | No text annotation | ||
| J4_9OFV_009 | 1/f/3010:3012, 1/f/3042:3043, 1/f/3098:3100, 1/f/3134:3136 | No text annotation | ||
| J5_9OFV_001 | 1/f/20:22, 1/i/35:42, 1/i/102:107, 1/i/115:116, 1/i/137:139 | No text annotation | ||
| J5_9OFV_002 | 1/f/658:663, 1/f/799:802, 1/f/941:944, 1/f/1375:1376, 1/f/1431:1437 | No text annotation | ||
| J5_9OFV_003 | 1/f/675:678, 1/f/702:706, 1/f/713:721, 1/f/749:751, 1/f/782:787 | No text annotation | ||
| J5_9OFV_004 | 1/f/1906:1914, 1/f/1938:1939, 1/f/2109:2110, 1/f/2114:2122, 1/f/2331:2333 | No text annotation | ||
| J5_9OFV_005 | 1/f/2399:2406, 1/f/2815:2823, 1/f/2867:2876, 1/f/2951:2957, 1/f/2975:2980 | No text annotation | ||
| J5_9OFV_006 | 1/f/2416:2419, 1/f/2611:2614, 1/f/2627:2628, 1/f/2650:2651, 1/f/2798:2804 | No text annotation | ||
| J6_9OFV_001 | 1/f/22:27, 1/f/58:68, 1/f/75:79, 1/f/106:110, 1/f/321:331, 1/i/32:35 | No text annotation | ||
| J6_9OFV_002 | 1/f/2416:2419, 1/f/2611:2614, 1/f/2627:2628, 1/f/2650:2653, 1/f/2754:2765, 1/f/2793:2804 | No text annotation | ||
| J7_9OFV_001 | 1/f/949:954, 1/f/967:968, 1/f/1114:1117, 1/f/1141:1146, 1/f/1157:1161, 1/f/1338:1339, 1/f/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9OFV_011 | No text annotation | ||
| J4_9OFV_010 | No text annotation | ||
| J4_9OFV_011 | No text annotation |
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