HL_9OFV_014
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- UCUUGAAACA
- Length
- 10 nucleotides
- Bulged bases
- 9OFV|1|f|C|648
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9OFV_014 not in the Motif Atlas
- Geometric match to HL_8CRE_013
- Geometric discrepancy: 0.0712
- The information below is about HL_8CRE_013
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
9OFV|1|f|U|640
9OFV|1|f|C|641
9OFV|1|f|U|642
9OFV|1|f|U|643
9OFV|1|f|G|644
9OFV|1|f|A|645
9OFV|1|f|A|646
9OFV|1|f|A|647
9OFV|1|f|C|648
9OFV|1|f|A|649
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain N
- 60S ribosomal protein L28
- Chain R
- Large ribosomal subunit protein eL32
- Chain k
- Large ribosomal subunit protein uL3
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