HL_9OFV_015
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- GUGUAAAAC
- Length
- 9 nucleotides
- Bulged bases
- 9OFV|1|f|U|689, 9OFV|1|f|A|691
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9OFV_015 not in the Motif Atlas
- Geometric match to HL_8CRE_014
- Geometric discrepancy: 0.0853
- The information below is about HL_8CRE_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_41464.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9OFV|1|f|G|686
9OFV|1|f|U|687
9OFV|1|f|G|688
9OFV|1|f|U|689
9OFV|1|f|A|690
9OFV|1|f|A|691
9OFV|1|f|A|692
9OFV|1|f|A|693
9OFV|1|f|C|694
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain L
- 60S ribosomal protein L26-A
- Chain i
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain l
- Large ribosomal subunit protein uL4A
- Chain t
- 60S ribosomal protein L13-A
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