HL_9OFV_029

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

UUGAUAUGAUG

Length

11 nucleotides

Bulged bases

9OFV|1|f|A|1352, 9OFV|1|f|U|1353, 9OFV|1|f|G|1354, 9OFV|1|f|U|1356

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OFV|1|f|U|1347
9OFV|1|f|U|1348
9OFV|1|f|G|1349
9OFV|1|f|A|1350
9OFV|1|f|U|1351
9OFV|1|f|A|1352
9OFV|1|f|U|1353
9OFV|1|f|G|1354
9OFV|1|f|A|1355
9OFV|1|f|U|1356
9OFV|1|f|G|1357

Current chains

Chain f

25S rRNA

Nearby chains

Chain 4

60S ribosomal protein L18-A

Chain R

Large ribosomal subunit protein eL32

Chain l

Large ribosomal subunit protein uL4A

Chain n

Large ribosomal subunit protein eL6B