HL_9OFV_040

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CCGUG

Length

5 nucleotides

Bulged bases

9OFV|1|f|C|1793, 9OFV|1|f|G|1794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OFV_040 not in the Motif Atlas

Geometric match to HL_8P9A_151

Geometric discrepancy: 0.0782

The information below is about HL_8P9A_151

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

9OFV|1|f|C|1792
9OFV|1|f|C|1793
9OFV|1|f|G|1794
9OFV|1|f|U|1795
9OFV|1|f|G|1796

Current chains

Chain f

25S rRNA

Nearby chains

Chain c

60S ribosomal protein L43-A

Chain j

60S ribosomal protein L2-A