HL_9OFV_041
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 9OFV|1|f|C|1846, 9OFV|1|f|G|1848, 9OFV|1|f|A|1850
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9OFV_041 not in the Motif Atlas
- Geometric match to HL_8CRE_040
- Geometric discrepancy: 0.0623
- The information below is about HL_8CRE_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89567.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
9OFV|1|f|C|1844
9OFV|1|f|G|1845
9OFV|1|f|C|1846
9OFV|1|f|A|1847
9OFV|1|f|G|1848
9OFV|1|f|C|1849
9OFV|1|f|A|1850
9OFV|1|f|G|1851
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain 1
- CAT-tailed nascent peptide
- Chain 3
- 60S ribosomal protein L17-A
- Chain W
- 60S ribosomal protein L37-A
- Chain Y
- 60S ribosomal protein L39
- Chain l
- Large ribosomal subunit protein uL4A
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