HL_9OFV_042

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

9OFV|1|f|C|1866

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OFV_042 not in the Motif Atlas

Geometric match to HL_8P9A_153

Geometric discrepancy: 0.0835

The information below is about HL_8P9A_153

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9OFV|1|f|U|1862
9OFV|1|f|G|1863
9OFV|1|f|A|1864
9OFV|1|f|A|1865
9OFV|1|f|C|1866
9OFV|1|f|A|1867
9OFV|1|f|G|1868

Current chains

Chain f

25S rRNA

Nearby chains

Chain 5

60S ribosomal protein L19-A