HL_9OFV_049

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9OFV|1|f|A|2372, 9OFV|1|f|A|2373, 9OFV|1|f|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OFV_049 not in the Motif Atlas

Geometric match to HL_8P9A_162

Geometric discrepancy: 0.0615

The information below is about HL_8P9A_162

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

9OFV|1|f|G|2369
9OFV|1|f|G|2370
9OFV|1|f|G|2371
9OFV|1|f|A|2372
9OFV|1|f|A|2373
9OFV|1|f|C|2374
9OFV|1|f|G|2375
9OFV|1|f|G|2376
9OFV|1|f|G|2377
9OFV|1|f|C|2378

Current chains

Chain f

25S rRNA

Nearby chains

Chain R

Large ribosomal subunit protein eL32

Chain k

Large ribosomal subunit protein uL3