HL_9OFV_053

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9OFV|1|f|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OFV_053 not in the Motif Atlas

Geometric match to HL_8P9A_165

Geometric discrepancy: 0.0892

The information below is about HL_8P9A_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

9OFV|1|f|C|2616
9OFV|1|f|U|2617
9OFV|1|f|G|2618
9OFV|1|f|G|2619
9OFV|1|f|G|2620
9OFV|1|f|G|2621
9OFV|1|f|C|2622
9OFV|1|f|G|2623
9OFV|1|f|G|2624

Current chains

Chain f

25S rRNA

Nearby chains

Chain O

Large ribosomal subunit protein eL29

Chain r

Large ribosomal subunit protein uL16

Chain y

Transfer RNA; tRNA