HL_9OFV_056

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OFV_056 not in the Motif Atlas

Geometric match to HL_8CRE_056

Geometric discrepancy: 0.0694

The information below is about HL_8CRE_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9OFV|1|f|C|2693
9OFV|1|f|A|2694
9OFV|1|f|A|2695
9OFV|1|f|A|2696
9OFV|1|f|A|2697
9OFV|1|f|G|2698
9OFV|1|f|G|2699
9OFV|1|f|G|2700

Current chains

Chain f

25S rRNA

Nearby chains

Chain 7

60S ribosomal protein L21-A

Chain b

60S ribosomal protein L42-A

Chain r

Large ribosomal subunit protein uL16