HL_9OFV_059
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- CGGAAUUUG
- Length
- 9 nucleotides
- Bulged bases
- 9OFV|1|f|G|2777
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9OFV_059 not in the Motif Atlas
- Geometric match to HL_8CRE_059
- Geometric discrepancy: 0.0619
- The information below is about HL_8CRE_059
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
9OFV|1|f|C|2776
9OFV|1|f|G|2777
9OFV|1|f|G|2778
9OFV|1|f|A|2779
9OFV|1|f|A|2780
9OFV|1|f|U|2781
9OFV|1|f|U|2782
9OFV|1|f|U|2783
9OFV|1|f|G|2784
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain N
- 60S ribosomal protein L28
- Chain V
- 60S ribosomal protein L36-A
- Chain b
- 60S ribosomal protein L42-A
- Chain t
- 60S ribosomal protein L13-A
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