HL_9OFV_062

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OFV_062 not in the Motif Atlas

Geometric match to HL_8CRE_062

Geometric discrepancy: 0.1353

The information below is about HL_8CRE_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9OFV|1|f|U|2920
9OFV|1|f|U|2921
9OFV|1|f|G|2922
9OFV|1|f|U|2923
9OFV|1|f|U|2924
9OFV|1|f|C|2925
9OFV|1|f|A|2926

Current chains

Chain f

25S rRNA

Nearby chains

Chain k

Large ribosomal subunit protein uL3

Chain x

Transfer RNA; tRNA