HL_9OFV_066

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

9OFV|1|f|G|3116, 9OFV|1|f|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OFV_066 not in the Motif Atlas

Geometric match to HL_8CRE_066

Geometric discrepancy: 0.047

The information below is about HL_8CRE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9OFV|1|f|C|3110
9OFV|1|f|U|3111
9OFV|1|f|G|3112
9OFV|1|f|A|3113
9OFV|1|f|A|3114
9OFV|1|f|C|3115
9OFV|1|f|G|3116
9OFV|1|f|C|3117
9OFV|1|f|C|3118
9OFV|1|f|U|3119
9OFV|1|f|C|3120
9OFV|1|f|U|3121
9OFV|1|f|A|3122
9OFV|1|f|A|3123
9OFV|1|f|G|3124

Current chains

Chain f

25S rRNA

Nearby chains

Chain Z

Ubiquitin-60S ribosomal protein L40

Chain a0

60S ribosomal protein L16-A

Chain q

60S ribosomal protein L9-A