HL_9OFV_068

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

9OFV|1|f|A|3243, 9OFV|1|f|A|3244, 9OFV|1|f|G|3246

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OFV_068 not in the Motif Atlas

Geometric match to HL_8CRE_068

Geometric discrepancy: 0.0991

The information below is about HL_8CRE_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07886.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

9OFV|1|f|C|3240
9OFV|1|f|G|3241
9OFV|1|f|G|3242
9OFV|1|f|A|3243
9OFV|1|f|A|3244
9OFV|1|f|A|3245
9OFV|1|f|G|3246
9OFV|1|f|G|3247

Current chains

Chain f

25S rRNA

Nearby chains

Chain a0

60S ribosomal protein L16-A

Chain k

Large ribosomal subunit protein uL3