HL_9OFV_075
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 9OFV|1|i|A|80, 9OFV|1|i|C|84, 9OFV|1|i|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9OFV_075 not in the Motif Atlas
- Geometric match to HL_8P9A_187
- Geometric discrepancy: 0.236
- The information below is about HL_8P9A_187
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68571.1
- Basepair signature
- cWW-tSH-tHS-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9OFV|1|i|U|69
9OFV|1|i|G|70
9OFV|1|i|A|71
9OFV|1|i|A|72
9OFV|1|i|U|73
9OFV|1|i|U|74
9OFV|1|i|G|75
9OFV|1|i|C|76
9OFV|1|i|A|77
9OFV|1|i|G|78
9OFV|1|i|A|79
9OFV|1|i|A|80
9OFV|1|i|U|81
9OFV|1|i|U|82
9OFV|1|i|C|83
9OFV|1|i|C|84
9OFV|1|i|G|85
9OFV|1|i|U|86
9OFV|1|i|G|87
9OFV|1|i|A|88
9OFV|1|i|A|89
Current chains
- Chain i
- 5.8S rRNA
Nearby chains
- Chain L
- 60S ribosomal protein L26-A
- Chain U
- 60S ribosomal protein L35-A
- Chain Y
- 60S ribosomal protein L39
- Chain f
- Large subunit ribosomal RNA; LSU rRNA
- Chain v
- Ribosome quality control complex subunit 1
Coloring options: