HL_9OFV_076
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- CACAUUG
- Length
- 7 nucleotides
- Bulged bases
- 9OFV|1|i|A|111, 9OFV|1|i|U|113
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9OFV_076 not in the Motif Atlas
- Geometric match to HL_8CRE_076
- Geometric discrepancy: 0.086
- The information below is about HL_8CRE_076
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53890.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
9OFV|1|i|C|108
9OFV|1|i|A|109
9OFV|1|i|C|110
9OFV|1|i|A|111
9OFV|1|i|U|112
9OFV|1|i|U|113
9OFV|1|i|G|114
Current chains
- Chain i
- 5.8S rRNA
Nearby chains
- Chain W
- 60S ribosomal protein L37-A
- Chain Y
- 60S ribosomal protein L39
- Chain b0
- 60S ribosomal protein L25
- Chain f
- Large subunit ribosomal RNA; LSU rRNA
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