HL_9OFV_077

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

9OFV|1|i|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OFV_077 not in the Motif Atlas

Geometric match to HL_8CRE_077

Geometric discrepancy: 0.1214

The information below is about HL_8CRE_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86883.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

9OFV|1|i|G|124
9OFV|1|i|U|125
9OFV|1|i|A|126
9OFV|1|i|U|127
9OFV|1|i|U|128
9OFV|1|i|C|129

Current chains

Chain i

5.8S rRNA

Nearby chains

Chain b0

60S ribosomal protein L25

Chain d

60S ribosomal protein L41-A

Chain f

Large subunit ribosomal RNA; LSU rRNA